G19_using_S2

Super-paramagnetic Clustering of 80 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	19		207308_at	SLCO1A2 Chr:12p12
2	32		213839_at	KIAA0500 Chr:14q32.2
3	35		214769_at	CLCN4 Chr:Xp22.3
4	44		221868_at	KIAA1155 Chr:2p13.2
5	33		214475_x_at	CAPN3 Chr:15q15.1-q21.1
6	39		218651_s_at	FLJ11196 Chr:15q22.32
7	20	G309	207323_s_at	MBP Chr:18q23
8	12	G309	204547_at	RAB40B Chr:17q25.3
9	45	G309	222862_s_at	AK5 Chr:1p31
10	17	G308 G309	205814_at	GRM3 Chr:7q21.1-q21.2
11	8	G308 G309	202890_at	MAP7 Chr:6q23.2
12	38	G308 G309	218469_at	GREM1 Chr:15q13-q15
13	37	G308 G309	218094_s_at	C20orf35 Chr:20q13.12
14	30	G308 G309	212829_at	--- ---
15	26	G308 G309	210944_s_at	CAPN3 Chr:15q15.1-q21.1
16	13	G308 G309	204681_s_at	RAPGEF5 Chr:7p15.3
17	79	G308 G309	244113_at	--- ---
18	59	G308 G309	230104_s_at	p25 Chr:5p15.3
19	29	G307 G308 G309	212750_at	PPP1R16B Chr:20q12
20	34	G307 G308 G309	214650_x_at	MOG Chr:6p22-p21.3
21	40	G307 G308 G309	219305_x_at	FBXO2 Chr:1p36.21
22	10	G307 G308 G309	204378_at	BCAS1 Chr:20q13.2-q13.3
23	14	G307 G308 G309	204733_at	KLK6 Chr:19q13.3
24	2	G307 G308 G309	1555807_a_at	MOG Chr:6p22-p21.3
25	5	G307 G308 G309	1562473_at	--- ---
26	11	G307 G308 G309	204467_s_at	SNCA Chr:4q21
27	1	G307 G308 G309	1553765_a_at	KIAA1900 Chr:6q16.3
28	15	G307 G308 G309	204777_s_at	MAL Chr:2cen-q13
29	56	G307 G308 G309	228624_at	FLJ11155 Chr:4q32.1
30	22	G307 G308 G309	209072_at	MBP Chr:18q23
31	36	G307 G308 G309	217613_at	FLJ11155 Chr:4q32.1
32	7	G307 G308 G309	1565809_x_at	--- Chr:1p36.33
33	23	G307 G308 G309	210169_at	KIAA0420 Chr:16p13.3
34	52	G307 G308 G309	227006_at	PPP1R14A Chr:19q13.1
35	70	G307 G308 G309	238498_at	--- ---
36	66	G307 G308 G309	235794_at	MOBP Chr:3p21.33
37	46	G307 G308 G309	223572_at	KIAA1173 Chr:3p21.33
38	69	G307 G308 G309	238008_at	MGC35308 Chr:6q27
39	74	G307 G308 G309	241717_at	LOC285281 Chr:3p21.33
40	4	G307 G308 G309	1557943_at	CNP Chr:17q21
41	18	G307 G308 G309	205989_s_at	MOG Chr:6p22-p21.3
42	41	G307 G308 G309	219429_at	FA2H Chr:16q23
43	47	G307 G308 G309	223699_at	CNDP1 Chr:18q22.3
44	68	G307 G308 G309	236838_at	--- ---
45	48	G307 G308 G309	224482_s_at	RAB11-FIP4 Chr:17q11.2
46	6	G307 G308 G309	1562608_at	--- ---
47	53	G307 G308 G309	227439_at	EB-1 Chr:12q23.1-q23.2
48	60	G307 G308 G309	231911_at	KIAA1189 Chr:2q24.2
49	62	G307 G308 G309	234261_at	--- ---
50	54	G307 G308 G309	227440_at	EB-1 Chr:12q23.1-q23.2
51	55	G307 G308 G309	227441_s_at	EB-1 Chr:12q23.1-q23.2
52	65	G307 G308 G309	235476_at	TSBF1 Chr:3q26.1
53	77	G307 G308 G309	242002_at	TCBA1 Chr:6q21
54	73	G307 G308 G309	240292_x_at	EB-1 Chr:12q23.1-q23.2
55	21	G307 G308 G309	207659_s_at	MOBP Chr:3p21.33
56	75	G307 G308 G309	241833_at	--- ---
57	72	G307 G308 G309	240053_x_at	--- ---
58	67	G307 G308 G309	236420_s_at	TMEM16D Chr:12q23.3
59	71	G307 G308 G309	239575_at	TMEM10 Chr:10q23-q24
60	80	G307 G308 G309	41577_at	PPP1R16B Chr:20q12
61	27	G308 G309	211836_s_at	MOG Chr:6p22-p21.3
62	78	G308 G309	242765_at	MOBP Chr:3p21.33
63	28	G308 G309	211890_x_at	CAPN3 Chr:15q15.1-q21.1
64	49	G308 G309	225727_at	PLEKHH1 Chr:14q24.1
65	24	G308 G309	210193_at	MOBP Chr:3p21.33
66	42	G308 G309	219750_at	FLJ11155 Chr:4q32.1
67	50	G309	225822_at	MGC17299 Chr:1p34.1
68	57		228891_at	LOC349236 Chr:9q22.2
69	16		205637_s_at	SH3GL3 Chr:15q24
70	61		232388_at	CNTNAP4 Chr:16q23.1
71	3		1557481_a_at	--- ---
72	25		210657_s_at	PNUTL2 Chr:17q22-q23
73	64		235342_at	SPOCK3 Chr:4q32.3
74	63		235236_at	--- ---
75	58		229781_at	--- ---
76	43		220026_at	CLCA4 Chr:1p31-p22
77	9		204073_s_at	C11orf9 Chr:11q12-q13.1
78	76		241873_at	UNC5C Chr:4q21-q23
79	31		213371_at	LDB3 Chr:10q22.3-q23.2
80	51		226018_at	Ells1 Chr:7p15.1

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	21
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:45:28

G19_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC