G19_using_S1

Super-paramagnetic Clustering of 80 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	50		225822_at	MGC17299 Chr:1p34.1
2	31		213371_at	LDB3 Chr:10q22.3-q23.2
3	33		214475_x_at	CAPN3 Chr:15q15.1-q21.1
4	26		210944_s_at	CAPN3 Chr:15q15.1-q21.1
5	28		211890_x_at	CAPN3 Chr:15q15.1-q21.1
6	53		227439_at	EB-1 Chr:12q23.1-q23.2
7	73		240292_x_at	EB-1 Chr:12q23.1-q23.2
8	68		236838_at	--- ---
9	54		227440_at	EB-1 Chr:12q23.1-q23.2
10	55		227441_s_at	EB-1 Chr:12q23.1-q23.2
11	62		234261_at	--- ---
12	51		226018_at	Ells1 Chr:7p15.1
13	59		230104_s_at	p25 Chr:5p15.3
14	70		238498_at	--- ---
15	8		202890_at	MAP7 Chr:6q23.2
16	27	G304 G305 G306	211836_s_at	MOG Chr:6p22-p21.3
17	2	G304 G305 G306	1555807_a_at	MOG Chr:6p22-p21.3
18	38	G304 G305 G306	218469_at	GREM1 Chr:15q13-q15
19	34	G304 G305 G306	214650_x_at	MOG Chr:6p22-p21.3
20	7	G304 G305 G306	1565809_x_at	--- Chr:1p36.33
21	47	G304 G305 G306	223699_at	CNDP1 Chr:18q22.3
22	15	G304 G305 G306	204777_s_at	MAL Chr:2cen-q13
23	37	G304 G305 G306	218094_s_at	C20orf35 Chr:20q13.12
24	30	G304 G305 G306	212829_at	--- ---
25	14	G304 G305 G306	204733_at	KLK6 Chr:19q13.3
26	18	G304 G305 G306	205989_s_at	MOG Chr:6p22-p21.3
27	22	G304 G305 G306	209072_at	MBP Chr:18q23
28	20	G304 G305 G306	207323_s_at	MBP Chr:18q23
29	21	G304 G305 G306	207659_s_at	MOBP Chr:3p21.33
30	78	G304 G305 G306	242765_at	MOBP Chr:3p21.33
31	74	G304 G305 G306	241717_at	LOC285281 Chr:3p21.33
32	66	G304 G305 G306	235794_at	MOBP Chr:3p21.33
33	44	G304 G305 G306	221868_at	KIAA1155 Chr:2p13.2
34	4	G304 G305 G306	1557943_at	CNP Chr:17q21
35	57	G304 G305 G306	228891_at	LOC349236 Chr:9q22.2
36	77	G304 G305 G306	242002_at	TCBA1 Chr:6q21
37	49	G304 G305 G306	225727_at	PLEKHH1 Chr:14q24.1
38	42	G304 G305 G306	219750_at	FLJ11155 Chr:4q32.1
39	61	G304 G305 G306	232388_at	CNTNAP4 Chr:16q23.1
40	1	G304 G305 G306	1553765_a_at	KIAA1900 Chr:6q16.3
41	52	G304 G305 G306	227006_at	PPP1R14A Chr:19q13.1
42	71	G304 G305 G306	239575_at	TMEM10 Chr:10q23-q24
43	19	G305 G306	207308_at	SLCO1A2 Chr:12p12
44	24	G305 G306	210193_at	MOBP Chr:3p21.33
45	36	G305 G306	217613_at	FLJ11155 Chr:4q32.1
46	43	G305 G306	220026_at	CLCA4 Chr:1p31-p22
47	3	G305 G306	1557481_a_at	--- ---
48	58	G305 G306	229781_at	--- ---
49	60	G305 G306	231911_at	KIAA1189 Chr:2q24.2
50	64	G305 G306	235342_at	SPOCK3 Chr:4q32.3
51	6	G305 G306	1562608_at	--- ---
52	56	G305 G306	228624_at	FLJ11155 Chr:4q32.1
53	25	G305 G306	210657_s_at	PNUTL2 Chr:17q22-q23
54	65	G305 G306	235476_at	TSBF1 Chr:3q26.1
55	39	G305 G306	218651_s_at	FLJ11196 Chr:15q22.32
56	5	G306	1562473_at	--- ---
57	75	G306	241833_at	--- ---
58	12	G306	204547_at	RAB40B Chr:17q25.3
59	35	G306	214769_at	CLCN4 Chr:Xp22.3
60	13	G306	204681_s_at	RAPGEF5 Chr:7p15.3
61	17	G306	205814_at	GRM3 Chr:7q21.1-q21.2
62	16	G306	205637_s_at	SH3GL3 Chr:15q24
63	45	G306	222862_s_at	AK5 Chr:1p31
64	72	G306	240053_x_at	--- ---
65	76	G306	241873_at	UNC5C Chr:4q21-q23
66	69	G306	238008_at	MGC35308 Chr:6q27
67	48	G306	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	67	G306	236420_s_at	TMEM16D Chr:12q23.3
69	11		204467_s_at	SNCA Chr:4q21
70	80		41577_at	PPP1R16B Chr:20q12
71	29		212750_at	PPP1R16B Chr:20q12
72	40		219305_x_at	FBXO2 Chr:1p36.21
73	79		244113_at	--- ---
74	10		204378_at	BCAS1 Chr:20q13.2-q13.3
75	9		204073_s_at	C11orf9 Chr:11q12-q13.1
76	41		219429_at	FA2H Chr:16q23
77	32		213839_at	KIAA0500 Chr:14q32.2
78	23		210169_at	KIAA0420 Chr:16p13.3
79	46		223572_at	KIAA1173 Chr:3p21.33
80	63		235236_at	--- ---

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:42:58

G19_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC