G18_using_S3

Super-paramagnetic Clustering of 25 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	12		210066_s_at		AQP4 Chr:18q11.2-q12.1
2	14		210068_s_at		AQP4 Chr:18q11.2-q12.1
3	15		210906_x_at		AQP4 Chr:18q11.2-q12.1
4	13		210067_at		AQP4 Chr:18q11.2-q12.1
5	5		205363_at		BBOX1 Chr:11p14.2
6	21		226228_at		AQP4 Chr:18q11.2-q12.1
7	10		209301_at		CA2 Chr:8q22
8	7		206022_at		NDP Chr:xp11.4
9	3		204041_at		MAOB Chr:xp11.23
10	4		204363_at		F3 Chr:1p22-p21
11	1		202800_at		SLC1A3 Chr:5p13
12	9		207455_at		P2RY1 Chr:3q25.2
13	2		203723_at		ITPKB Chr:1q42.13
14	16		213395_at		MLC1 Chr:22q13.33
15	24		235795_at		PAX6 Chr:11p13
16	17		213618_at		CENTD1 Chr:4p15.1
17	22		227084_at		DTNA Chr:18q12
18	11		209921_at		SLC7A11 Chr:4q28-q32
19	23		231925_at		--- ---
20	6		205741_s_at		DTNA Chr:18q12
21	20		226189_at		--- ---
22	25		238003_at		FLJ25530 Chr:11q24.2
23	19		223605_at		SLC25A18 Chr:22q11.2
24	18		217678_at		SLC7A11 Chr:4q28-q32
25	8		207443_at		NR2E1 Chr:6q21

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:37:06