G17_using_S6

Super-paramagnetic Clustering of 141 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	23		204339_s_at	RGS4 Chr:1q23.2
2	22		204337_at	RGS4 Chr:1q23.2
3	2		1553422_s_at	A2BP1 Chr:16p13.3
4	75		221217_s_at	A2BP1 Chr:16p13.3
5	92		227830_at	GABRB3 Chr:15q11.2-q12
6	99		229724_at	GABRB3 Chr:15q11.2-q12
7	90		227690_at	GABRB3 Chr:15q11.2-q12
8	137		243163_at	--- ---
9	9	G303	1557122_s_at	--- ---
10	134	G303	242344_at	--- ---
11	49	G296 G300 G301 G302 G303	210227_at	DLGAP2 Chr:8p23
12	101	G296 G300 G301 G302 G303	230137_at	FLJ30834 Chr:4q27
13	140	G296 G300 G301 G302 G303	244118_at	GABRA1 Chr:5q34-q35
14	43	G296 G300 G301 G302 G303	206678_at	GABRA1 Chr:5q34-q35
15	81	G296 G300 G301 G302 G303	224650_at	MAL2 Chr:8q23
16	73	G296 G300 G301 G302 G303	220030_at	STYK1 Chr:12p13.31
17	8	G296 G300 G301 G302 G303	1556366_s_at	FLJ33708 Chr:6p24.3
18	113	G296 G300 G301 G302 G303	233002_at	KIAA1622 Chr:14q32.2
19	3	G296 G300 G301 G302 G303	1553864_at	DKFZp761H2121 Chr:10q26.13
20	72	G296 G300 G301 G302 G303	219937_at	TRHDE Chr:12q15-q21
21	41	G296 G300 G301 G302 G303	206456_at	GABRA5 Chr:15q11.2-q12
22	37	G296 G300 G301 G302 G303	205827_at	CCK Chr:3p22-p21.3
23	5	G296 G300 G301 G302 G303	1556095_at	UNC13C Chr:15q21.1
24	141	G296 G300 G301 G302 G303	52837_at	KIAA1644 Chr:22q13
25	35	G296 G300 G301 G302 G303	205635_at	HAPIP Chr:3q21.2
26	120	G296 G300 G301 G302 G303	237384_x_at	--- ---
27	124	G296 G300 G301 G302 G303	239579_at	ABHD7 Chr:1p22.1
28	40	G296 G300 G301 G302 G303	206376_at	SLC6A15 Chr:12q21.3
29	17	G296 G300 G301 G302 G303	203998_s_at	SYT1 Chr:12cen-q21
30	7	G296 G300 G301 G302 G303	1556351_at	HCN1 Chr:5p12
31	130	G296 G300 G301 G302 G303	241399_at	TAFA2 Chr:12q13.3-q14.1
32	112	G296 G300 G301 G302 G303	232426_at	--- ---
33	56	G296 G300 G301 G302 G303	213921_at	SST Chr:3q28
34	65	G296 G300 G301 G302 G303	215241_at	TMEM16C Chr:11p14.3
35	69	G296 G300 G301 G302 G303	219425_at	SULT4A1 Chr:22q13.2-q13.31
36	132	G296 G300 G301 G302 G303	241807_x_at	--- ---
37	111	G296 G300 G301 G302 G303	232411_at	--- ---
38	34	G300 G301 G302 G303	205414_s_at	KIAA0672 Chr:17p12
39	105	G300 G301 G302 G303	230551_at	--- ---
40	79	G300 G301 G302 G303	224164_at	TPM3 Chr:1q21.2
41	121	G300 G301 G302 G303	238786_at	--- ---
42	106	G300 G301 G302 G303	230698_at	--- ---
43	44	G300 G301 G302 G303	206780_at	GAD2 Chr:10p11.23
44	93	G300 G301 G302 G303	228262_at	FLJ14503 Chr:xp22.13
45	139	G300 G301 G302 G303	243929_at	--- ---
46	46	G297 G300 G301 G302 G303	209726_at	CA11 Chr:19q13.3
47	50	G297 G300 G301 G302 G303	210247_at	SYN2 Chr:3p25
48	19	G297 G300 G301 G302 G303	204081_at	NRGN Chr:11q24
49	32	G297 G300 G301 G302 G303	205113_at	NEF3 Chr:8p21
50	86	G297 G300 G301 G302 G303	227053_at	PACSIN1 Chr:6p21.3
51	21	G297 G300 G301 G302 G303	204229_at	SLC17A7 Chr:19q13
52	63	G297 G300 G301 G302 G303	214945_at	NY-REN-7 Chr:5q35.3
53	6	G297 G300 G301 G302 G303	1556096_s_at	UNC13C Chr:15q21.1
54	114	G297 G300 G301 G302 G303	233139_at	--- ---
55	108	G297 G300 G301 G302 G303	231489_x_at	--- ---
56	16	G297 G300 G301 G302 G303	203798_s_at	VSNL1 Chr:2p24.3
57	88	G297 G300 G301 G302 G303	227240_at	NGEF Chr:2q37
58	1	G297 G300 G301 G302 G303	1552714_at	CREG2 Chr:2q12.1
59	95	G297 G300 G301 G302 G303	229039_at	SYN2 Chr:3p25
60	48	G297 G300 G301 G302 G303	210040_at	SLC12A5 Chr:20q13.12
61	62	G297 G300 G301 G302 G303	214811_at	KIAA0318 Chr:12q24.33
62	83	G297 G300 G301 G302 G303	225111_s_at	NAPB Chr:20p12.3-p11.21
63	18	G297 G300 G301 G302 G303	203999_at	SYT1 Chr:12cen-q21
64	127	G297 G300 G301 G302 G303	239765_at	--- ---
65	128	G297 G300 G301 G302 G303	239767_at	--- ---
66	36	G297 G300 G301 G302 G303	205691_at	SYNGR3 Chr:16p13
67	25	G297 G300 G301 G302 G303	204546_at	KIAA0513 Chr:16q24.1
68	70	G297 G300 G301 G302 G303	219659_at	ATP8A2 Chr:13q12-13
69	45	G297 G300 G301 G302 G303	209556_at	NCDN Chr:1p34.3
70	26	G297 G300 G301 G302 G303	204697_s_at	CHGA Chr:14q32
71	85	G297 G300 G301 G302 G303	226382_at	LOC283070 Chr:10p14
72	100	G297 G300 G301 G302 G303	230076_at	FLJ10156 Chr:17p13.2
73	87	G297 G300 G301 G302 G303	227226_at	C6orf117 Chr:6q15
74	10	G297 G300 G301 G302 G303	1559545_at	--- ---
75	64	G297 G300 G301 G302 G303	214956_at	--- ---
76	57	G297 G300 G301 G302 G303	214044_at	RYR2 Chr:1q42.1-q43
77	71	G297 G300 G301 G302 G303	219671_at	HPCAL4 Chr:1p34.2
78	80	G297 G300 G301 G302 G303	224209_s_at	GDA Chr:9q21.11-21.33
79	11	G300 G301 G302 G303	1568612_at	GABRG2 Chr:5q31.1-q33.1
80	14	G300 G301 G302 G303	202507_s_at	SNAP25 Chr:20p12-p11.2
81	119	G300 G301 G302 G303	236456_at	PTPN5 Chr:11p15.1
82	110	G300 G301 G302 G303	232305_at	HMGCLL1 Chr:6p12.1
83	74	G300 G301 G302 G303	220359_s_at	ARPP-21 Chr:3p22.1
84	4	G299 G301 G302 G303	1555958_at	CRTAC1 Chr:10q22
85	20	G298 G299 G301 G302 G303	204134_at	PDE2A Chr:11q13.3
86	122	G298 G299 G301 G302 G303	238966_at	BRUNOL4 Chr:18q12
87	77	G298 G299 G301 G302 G303	223529_at	SYT4 Chr:18q12.3
88	118	G298 G299 G301 G302 G303	236448_at	UNC5A Chr:5q35.3
89	27	G298 G299 G301 G302 G303	204722_at	SCN3B Chr:11q24.1
90	28	G298 G299 G301 G302 G303	204723_at	SCN3B Chr:11q24.1
91	78	G298 G299 G301 G302 G303	223654_s_at	BRUNOL4 Chr:18q12
92	138	G298 G299 G301 G302 G303	243666_at	BRUNOL4 Chr:18q12
93	103	G298 G299 G301 G302 G303	230262_at	--- ---
94	47	G298 G299 G301 G302 G303	210016_at	MYT1L Chr:2p25.3
95	115	G298 G299 G301 G302 G303	235066_at	MAP4 Chr:3p21
96	31	G298 G299 G301 G302 G303	204953_at	SNAP91 Chr:6q15
97	133	G298 G299 G301 G302 G303	242193_at	--- Chr:8q12.3
98	60	G298 G299 G301 G302 G303	214230_at	CDC42 Chr:1p36.1
99	136	G298 G299 G301 G302 G303	242999_at	ARHGEF7 Chr:13q34
100	84	G298 G299 G301 G302 G303	226086_at	SYT13 Chr:11p12-p11
101	98	G298 G299 G301 G302 G303	229300_at	--- ---
102	24	G299 G301 G302 G303	204465_s_at	INA Chr:10q24.33
103	38	G299 G301 G302 G303	206013_s_at	ACTL6 Chr:7q22
104	67	G299 G301 G302 G303	218623_at	HMP19 Chr:5q35.2
105	51	G299 G301 G302 G303	210721_s_at	PAK7 Chr:20p12
106	116	G299 G301 G302 G303	235230_at	--- ---
107	33	G299 G301 G302 G303	205257_s_at	AMPH Chr:7p14-p13
108	109	G299 G301 G302 G303	231986_at	RIMS1 Chr:6q12-q13
109	91	G301 G302 G303	227702_at	CYP4X1 Chr:1p33
110	131	G301 G302 G303	241672_at	LOC400120 Chr:13q13.2
111	117	G301 G302 G303	236166_at	LOC285147 Chr:2p25.2
112	12	G301 G302 G303	202073_at	OPTN Chr:10p14
113	68	G301 G302 G303	219308_s_at	AK5 Chr:1p31
114	53	G301 G302 G303	213280_at	GARNL4 Chr:17p13.3
115	66	G302 G303	216086_at	SV2C Chr:5q13.3
116	42	G302 G303	206552_s_at	TAC1 Chr:7q21-q22
117	129	G302 G303	241382_at	--- ---
118	102	G302 G303	230255_at	GABRD Chr:1p36.3
119	58	G302 G303	214098_at	KIAA1107 Chr:1p22.1
120	30	G302 G303	204869_at	PCSK2 Chr:20p11.2
121	135	G302 G303	242404_at	--- ---
122	52	G302 G303	212473_s_at	MICAL2 Chr:11p15.3
123	59	G303	214111_at	OPCML Chr:11q25
124	104	G303	230497_at	BRUNOL5 Chr:19p13
125	126	G303	239678_at	--- ---
126	107	G303	230932_at	--- ---
127	125	G303	239671_at	--- ---
128	55	G303	213904_at	--- ---
129	61	G303	214376_at	--- ---
130	82		224801_at	NDFIP2 Chr:13q22.2
131	96		229254_at	DKFZp761N1114 Chr:1q32.1
132	94		229029_at	--- ---
133	123		239357_at	--- ---
134	76		223500_at	CPLX1 Chr:4p16.3
135	15		202712_s_at	CKMT1 Chr:15q15
136	39		206196_s_at	RPIP8 Chr:17q21.31
137	13		202260_s_at	STXBP1 Chr:9q34.1
138	54		213307_at	SHANK2 Chr:11q13.2
139	29		204763_s_at	GNAO1 Chr:16q13
140	89		227641_at	MGC33974 Chr:16p13.3
141	97		229294_at	JPH3 Chr:16q24.3

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:33:47

G17_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC