G17_using_S5

Super-paramagnetic Clustering of 141 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1553422_s_at	A2BP1 Chr:16p13.3
2	75		221217_s_at	A2BP1 Chr:16p13.3
3	23		204339_s_at	RGS4 Chr:1q23.2
4	22		204337_at	RGS4 Chr:1q23.2
5	92		227830_at	GABRB3 Chr:15q11.2-q12
6	99		229724_at	GABRB3 Chr:15q11.2-q12
7	90		227690_at	GABRB3 Chr:15q11.2-q12
8	137		243163_at	--- ---
9	57	G289 G293 G295	214044_at	RYR2 Chr:1q42.1-q43
10	46	G289 G293 G295	209726_at	CA11 Chr:19q13.3
11	108	G289 G293 G295	231489_x_at	--- ---
12	16	G289 G293 G295	203798_s_at	VSNL1 Chr:2p24.3
13	50	G289 G293 G295	210247_at	SYN2 Chr:3p25
14	32	G289 G293 G295	205113_at	NEF3 Chr:8p21
15	19	G289 G293 G295	204081_at	NRGN Chr:11q24
16	63	G289 G293 G295	214945_at	NY-REN-7 Chr:5q35.3
17	25	G289 G293 G295	204546_at	KIAA0513 Chr:16q24.1
18	86	G289 G293 G295	227053_at	PACSIN1 Chr:6p21.3
19	21	G289 G293 G295	204229_at	SLC17A7 Chr:19q13
20	95	G289 G293 G295	229039_at	SYN2 Chr:3p25
21	6	G289 G293 G295	1556096_s_at	UNC13C Chr:15q21.1
22	70	G289 G293 G295	219659_at	ATP8A2 Chr:13q12-13
23	1	G289 G293 G295	1552714_at	CREG2 Chr:2q12.1
24	71	G289 G293 G295	219671_at	HPCAL4 Chr:1p34.2
25	48	G289 G293 G295	210040_at	SLC12A5 Chr:20q13.12
26	114	G289 G293 G295	233139_at	--- ---
27	45	G289 G293 G295	209556_at	NCDN Chr:1p34.3
28	62	G289 G293 G295	214811_at	KIAA0318 Chr:12q24.33
29	127	G289 G293 G295	239765_at	--- ---
30	83	G289 G293 G295	225111_s_at	NAPB Chr:20p12.3-p11.21
31	18	G289 G293 G295	203999_at	SYT1 Chr:12cen-q21
32	26	G289 G293 G295	204697_s_at	CHGA Chr:14q32
33	128	G289 G293 G295	239767_at	--- ---
34	85	G289 G293 G295	226382_at	LOC283070 Chr:10p14
35	88	G289 G293 G295	227240_at	NGEF Chr:2q37
36	10	G289 G293 G295	1559545_at	--- ---
37	100	G289 G293 G295	230076_at	FLJ10156 Chr:17p13.2
38	36	G289 G293 G295	205691_at	SYNGR3 Chr:16p13
39	87	G289 G293 G295	227226_at	C6orf117 Chr:6q15
40	80	G289 G293 G295	224209_s_at	GDA Chr:9q21.11-21.33
41	44	G289 G293 G295	206780_at	GAD2 Chr:10p11.23
42	93	G289 G293 G295	228262_at	FLJ14503 Chr:xp22.13
43	139	G289 G293 G295	243929_at	--- ---
44	49	G290 G292 G293 G295	210227_at	DLGAP2 Chr:8p23
45	43	G290 G292 G293 G295	206678_at	GABRA1 Chr:5q34-q35
46	140	G290 G292 G293 G295	244118_at	GABRA1 Chr:5q34-q35
47	81	G290 G292 G293 G295	224650_at	MAL2 Chr:8q23
48	3	G290 G292 G293 G295	1553864_at	DKFZp761H2121 Chr:10q26.13
49	41	G290 G292 G293 G295	206456_at	GABRA5 Chr:15q11.2-q12
50	37	G290 G292 G293 G295	205827_at	CCK Chr:3p22-p21.3
51	35	G290 G292 G293 G295	205635_at	HAPIP Chr:3q21.2
52	124	G290 G292 G293 G295	239579_at	ABHD7 Chr:1p22.1
53	40	G290 G292 G293 G295	206376_at	SLC6A15 Chr:12q21.3
54	17	G290 G292 G293 G295	203998_s_at	SYT1 Chr:12cen-q21
55	7	G290 G292 G293 G295	1556351_at	HCN1 Chr:5p12
56	130	G290 G292 G293 G295	241399_at	TAFA2 Chr:12q13.3-q14.1
57	112	G290 G292 G293 G295	232426_at	--- ---
58	69	G290 G292 G293 G295	219425_at	SULT4A1 Chr:22q13.2-q13.31
59	73	G290 G292 G293 G295	220030_at	STYK1 Chr:12p13.31
60	113	G290 G292 G293 G295	233002_at	KIAA1622 Chr:14q32.2
61	120	G290 G292 G293 G295	237384_x_at	--- ---
62	65	G290 G292 G293 G295	215241_at	TMEM16C Chr:11p14.3
63	141	G290 G292 G293 G295	52837_at	KIAA1644 Chr:22q13
64	56	G290 G292 G293 G295	213921_at	SST Chr:3q28
65	9	G292 G293 G295	1557122_s_at	--- ---
66	134	G292 G293 G295	242344_at	--- ---
67	8	G292 G293 G295	1556366_s_at	FLJ33708 Chr:6p24.3
68	5	G292 G293 G295	1556095_at	UNC13C Chr:15q21.1
69	72	G292 G293 G295	219937_at	TRHDE Chr:12q15-q21
70	101	G292 G293 G295	230137_at	FLJ30834 Chr:4q27
71	132	G292 G293 G295	241807_x_at	--- ---
72	74	G292 G293 G295	220359_s_at	ARPP-21 Chr:3p22.1
73	34	G293 G295	205414_s_at	KIAA0672 Chr:17p12
74	105	G293 G295	230551_at	--- ---
75	106	G293 G295	230698_at	--- ---
76	79	G293 G295	224164_at	TPM3 Chr:1q21.2
77	121	G293 G295	238786_at	--- ---
78	131	G293 G295	241672_at	LOC400120 Chr:13q13.2
79	91	G293 G295	227702_at	CYP4X1 Chr:1p33
80	110	G293 G295	232305_at	HMGCLL1 Chr:6p12.1
81	111	G293 G295	232411_at	--- ---
82	64	G293 G295	214956_at	--- ---
83	11	G293 G295	1568612_at	GABRG2 Chr:5q31.1-q33.1
84	14	G293 G295	202507_s_at	SNAP25 Chr:20p12-p11.2
85	33	G294 G295	205257_s_at	AMPH Chr:7p14-p13
86	20	G294 G295	204134_at	PDE2A Chr:11q13.3
87	15	G294 G295	202712_s_at	CKMT1 Chr:15q15
88	76	G294 G295	223500_at	CPLX1 Chr:4p16.3
89	39	G294 G295	206196_s_at	RPIP8 Chr:17q21.31
90	4	G294 G295	1555958_at	CRTAC1 Chr:10q22
91	24	G294 G295	204465_s_at	INA Chr:10q24.33
92	59	G294 G295	214111_at	OPCML Chr:11q25
93	38	G294 G295	206013_s_at	ACTL6 Chr:7q22
94	67	G294 G295	218623_at	HMP19 Chr:5q35.2
95	104	G294 G295	230497_at	BRUNOL5 Chr:19p13
96	126	G294 G295	239678_at	--- ---
97	13	G291 G294 G295	202260_s_at	STXBP1 Chr:9q34.1
98	54	G291 G294 G295	213307_at	SHANK2 Chr:11q13.2
99	27	G291 G294 G295	204722_at	SCN3B Chr:11q24.1
100	28	G291 G294 G295	204723_at	SCN3B Chr:11q24.1
101	47	G291 G294 G295	210016_at	MYT1L Chr:2p25.3
102	77	G291 G294 G295	223529_at	SYT4 Chr:18q12.3
103	78	G291 G294 G295	223654_s_at	BRUNOL4 Chr:18q12
104	122	G291 G294 G295	238966_at	BRUNOL4 Chr:18q12
105	115	G291 G294 G295	235066_at	MAP4 Chr:3p21
106	31	G291 G294 G295	204953_at	SNAP91 Chr:6q15
107	60	G291 G294 G295	214230_at	CDC42 Chr:1p36.1
108	136	G291 G294 G295	242999_at	ARHGEF7 Chr:13q34
109	98	G291 G294 G295	229300_at	--- ---
110	103	G291 G294 G295	230262_at	--- ---
111	118	G291 G294 G295	236448_at	UNC5A Chr:5q35.3
112	133	G291 G294 G295	242193_at	--- Chr:8q12.3
113	138	G291 G294 G295	243666_at	BRUNOL4 Chr:18q12
114	58	G294 G295	214098_at	KIAA1107 Chr:1p22.1
115	84	G294 G295	226086_at	SYT13 Chr:11p12-p11
116	107	G294 G295	230932_at	--- ---
117	51	G294 G295	210721_s_at	PAK7 Chr:20p12
118	116	G294 G295	235230_at	--- ---
119	109	G294 G295	231986_at	RIMS1 Chr:6q12-q13
120	119	G294 G295	236456_at	PTPN5 Chr:11p15.1
121	42	G295	206552_s_at	TAC1 Chr:7q21-q22
122	53	G295	213280_at	GARNL4 Chr:17p13.3
123	55	G295	213904_at	--- ---
124	61	G295	214376_at	--- ---
125	102	G295	230255_at	GABRD Chr:1p36.3
126	66	G295	216086_at	SV2C Chr:5q13.3
127	129	G295	241382_at	--- ---
128	125	G295	239671_at	--- ---
129	30	G295	204869_at	PCSK2 Chr:20p11.2
130	135	G295	242404_at	--- ---
131	52	G295	212473_s_at	MICAL2 Chr:11p15.3
132	29		204763_s_at	GNAO1 Chr:16q13
133	89		227641_at	MGC33974 Chr:16p13.3
134	97		229294_at	JPH3 Chr:16q24.3
135	68		219308_s_at	AK5 Chr:1p31
136	117		236166_at	LOC285147 Chr:2p25.2
137	12		202073_at	OPTN Chr:10p14
138	82		224801_at	NDFIP2 Chr:13q22.2
139	96		229254_at	DKFZp761N1114 Chr:1q32.1
140	94		229029_at	--- ---
141	123		239357_at	--- ---

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:29:34

G17_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC