G17_using_S4

Super-paramagnetic Clustering of 141 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1553422_s_at	A2BP1 Chr:16p13.3
2	75		221217_s_at	A2BP1 Chr:16p13.3
3	23		204339_s_at	RGS4 Chr:1q23.2
4	22		204337_at	RGS4 Chr:1q23.2
5	90	G288	227690_at	GABRB3 Chr:15q11.2-q12
6	99	G288	229724_at	GABRB3 Chr:15q11.2-q12
7	92	G288	227830_at	GABRB3 Chr:15q11.2-q12
8	137	G288	243163_at	--- ---
9	109	G288	231986_at	RIMS1 Chr:6q12-q13
10	9	G286 G287 G288	1557122_s_at	--- ---
11	134	G286 G287 G288	242344_at	--- ---
12	46	G284 G286 G287 G288	209726_at	CA11 Chr:19q13.3
13	108	G284 G286 G287 G288	231489_x_at	--- ---
14	63	G284 G286 G287 G288	214945_at	NY-REN-7 Chr:5q35.3
15	21	G284 G286 G287 G288	204229_at	SLC17A7 Chr:19q13
16	32	G284 G286 G287 G288	205113_at	NEF3 Chr:8p21
17	95	G284 G286 G287 G288	229039_at	SYN2 Chr:3p25
18	19	G284 G286 G287 G288	204081_at	NRGN Chr:11q24
19	1	G284 G286 G287 G288	1552714_at	CREG2 Chr:2q12.1
20	86	G284 G286 G287 G288	227053_at	PACSIN1 Chr:6p21.3
21	50	G284 G286 G287 G288	210247_at	SYN2 Chr:3p25
22	7	G284 G286 G287 G288	1556351_at	HCN1 Chr:5p12
23	25	G284 G286 G287 G288	204546_at	KIAA0513 Chr:16q24.1
24	70	G284 G286 G287 G288	219659_at	ATP8A2 Chr:13q12-13
25	139	G284 G286 G287 G288	243929_at	--- ---
26	6	G284 G286 G287 G288	1556096_s_at	UNC13C Chr:15q21.1
27	34	G284 G286 G287 G288	205414_s_at	KIAA0672 Chr:17p12
28	48	G284 G286 G287 G288	210040_at	SLC12A5 Chr:20q13.12
29	112	G284 G286 G287 G288	232426_at	--- ---
30	45	G284 G286 G287 G288	209556_at	NCDN Chr:1p34.3
31	62	G284 G286 G287 G288	214811_at	KIAA0318 Chr:12q24.33
32	114	G284 G286 G287 G288	233139_at	--- ---
33	127	G284 G286 G287 G288	239765_at	--- ---
34	105	G284 G286 G287 G288	230551_at	--- ---
35	26	G284 G286 G287 G288	204697_s_at	CHGA Chr:14q32
36	35	G284 G286 G287 G288	205635_at	HAPIP Chr:3q21.2
37	36	G284 G286 G287 G288	205691_at	SYNGR3 Chr:16p13
38	40	G284 G286 G287 G288	206376_at	SLC6A15 Chr:12q21.3
39	5	G284 G286 G287 G288	1556095_at	UNC13C Chr:15q21.1
40	85	G284 G286 G287 G288	226382_at	LOC283070 Chr:10p14
41	80	G284 G286 G287 G288	224209_s_at	GDA Chr:9q21.11-21.33
42	18	G284 G286 G287 G288	203999_at	SYT1 Chr:12cen-q21
43	57	G286 G287 G288	214044_at	RYR2 Chr:1q42.1-q43
44	71	G286 G287 G288	219671_at	HPCAL4 Chr:1p34.2
45	3	G286 G287 G288	1553864_at	DKFZp761H2121 Chr:10q26.13
46	43	G286 G287 G288	206678_at	GABRA1 Chr:5q34-q35
47	140	G286 G287 G288	244118_at	GABRA1 Chr:5q34-q35
48	81	G286 G287 G288	224650_at	MAL2 Chr:8q23
49	113	G286 G287 G288	233002_at	KIAA1622 Chr:14q32.2
50	37	G286 G287 G288	205827_at	CCK Chr:3p22-p21.3
51	17	G286 G287 G288	203998_s_at	SYT1 Chr:12cen-q21
52	44	G286 G287 G288	206780_at	GAD2 Chr:10p11.23
53	49	G286 G287 G288	210227_at	DLGAP2 Chr:8p23
54	87	G286 G287 G288	227226_at	C6orf117 Chr:6q15
55	73	G286 G287 G288	220030_at	STYK1 Chr:12p13.31
56	65	G286 G287 G288	215241_at	TMEM16C Chr:11p14.3
57	120	G286 G287 G288	237384_x_at	--- ---
58	102	G286 G287 G288	230255_at	GABRD Chr:1p36.3
59	42	G286 G287 G288	206552_s_at	TAC1 Chr:7q21-q22
60	129	G286 G287 G288	241382_at	--- ---
61	101	G286 G287 G288	230137_at	FLJ30834 Chr:4q27
62	124	G286 G287 G288	239579_at	ABHD7 Chr:1p22.1
63	141	G286 G287 G288	52837_at	KIAA1644 Chr:22q13
64	69	G286 G287 G288	219425_at	SULT4A1 Chr:22q13.2-q13.31
65	83	G286 G287 G288	225111_s_at	NAPB Chr:20p12.3-p11.21
66	14	G286 G287 G288	202507_s_at	SNAP25 Chr:20p12-p11.2
67	11	G286 G287 G288	1568612_at	GABRG2 Chr:5q31.1-q33.1
68	8	G286 G287 G288	1556366_s_at	FLJ33708 Chr:6p24.3
69	66	G286 G287 G288	216086_at	SV2C Chr:5q13.3
70	93	G286 G287 G288	228262_at	FLJ14503 Chr:xp22.13
71	132	G286 G287 G288	241807_x_at	--- ---
72	111	G286 G287 G288	232411_at	--- ---
73	118	G285 G286 G287 G288	236448_at	UNC5A Chr:5q35.3
74	27	G285 G286 G287 G288	204722_at	SCN3B Chr:11q24.1
75	28	G285 G286 G287 G288	204723_at	SCN3B Chr:11q24.1
76	98	G285 G286 G287 G288	229300_at	--- ---
77	103	G285 G286 G287 G288	230262_at	--- ---
78	78	G285 G286 G287 G288	223654_s_at	BRUNOL4 Chr:18q12
79	122	G285 G286 G287 G288	238966_at	BRUNOL4 Chr:18q12
80	138	G285 G286 G287 G288	243666_at	BRUNOL4 Chr:18q12
81	10	G285 G286 G287 G288	1559545_at	--- ---
82	133	G285 G286 G287 G288	242193_at	--- Chr:8q12.3
83	104	G285 G286 G287 G288	230497_at	BRUNOL5 Chr:19p13
84	67	G285 G286 G287 G288	218623_at	HMP19 Chr:5q35.2
85	77	G285 G286 G287 G288	223529_at	SYT4 Chr:18q12.3
86	47	G285 G286 G287 G288	210016_at	MYT1L Chr:2p25.3
87	13	G285 G286 G287 G288	202260_s_at	STXBP1 Chr:9q34.1
88	84	G285 G286 G287 G288	226086_at	SYT13 Chr:11p12-p11
89	31	G285 G286 G287 G288	204953_at	SNAP91 Chr:6q15
90	79	G285 G286 G287 G288	224164_at	TPM3 Chr:1q21.2
91	136	G285 G286 G287 G288	242999_at	ARHGEF7 Chr:13q34
92	60	G285 G286 G287 G288	214230_at	CDC42 Chr:1p36.1
93	121	G285 G286 G287 G288	238786_at	--- ---
94	4	G285 G286 G287 G288	1555958_at	CRTAC1 Chr:10q22
95	115	G285 G286 G287 G288	235066_at	MAP4 Chr:3p21
96	24	G285 G286 G287 G288	204465_s_at	INA Chr:10q24.33
97	64	G285 G286 G287 G288	214956_at	--- ---
98	106	G285 G286 G287 G288	230698_at	--- ---
99	100	G285 G286 G287 G288	230076_at	FLJ10156 Chr:17p13.2
100	54	G285 G286 G287 G288	213307_at	SHANK2 Chr:11q13.2
101	20	G285 G286 G287 G288	204134_at	PDE2A Chr:11q13.3
102	125	G285 G286 G287 G288	239671_at	--- ---
103	119	G285 G286 G287 G288	236456_at	PTPN5 Chr:11p15.1
104	76	G286 G287 G288	223500_at	CPLX1 Chr:4p16.3
105	15	G286 G287 G288	202712_s_at	CKMT1 Chr:15q15
106	128	G286 G287 G288	239767_at	--- ---
107	39	G286 G287 G288	206196_s_at	RPIP8 Chr:17q21.31
108	38	G286 G287 G288	206013_s_at	ACTL6 Chr:7q22
109	59	G286 G287 G288	214111_at	OPCML Chr:11q25
110	107	G286 G287 G288	230932_at	--- ---
111	16	G286 G287 G288	203798_s_at	VSNL1 Chr:2p24.3
112	51	G286 G287 G288	210721_s_at	PAK7 Chr:20p12
113	117	G286 G287 G288	236166_at	LOC285147 Chr:2p25.2
114	68	G286 G287 G288	219308_s_at	AK5 Chr:1p31
115	116	G286 G287 G288	235230_at	--- ---
116	126	G286 G287 G288	239678_at	--- ---
117	12	G287 G288	202073_at	OPTN Chr:10p14
118	33	G287 G288	205257_s_at	AMPH Chr:7p14-p13
119	58	G287 G288	214098_at	KIAA1107 Chr:1p22.1
120	55	G287 G288	213904_at	--- ---
121	61	G287 G288	214376_at	--- ---
122	52	G287 G288	212473_s_at	MICAL2 Chr:11p15.3
123	56	G288	213921_at	SST Chr:3q28
124	74	G288	220359_s_at	ARPP-21 Chr:3p22.1
125	72	G288	219937_at	TRHDE Chr:12q15-q21
126	130	G288	241399_at	TAFA2 Chr:12q13.3-q14.1
127	30	G288	204869_at	PCSK2 Chr:20p11.2
128	135	G288	242404_at	--- ---
129	29		204763_s_at	GNAO1 Chr:16q13
130	89		227641_at	MGC33974 Chr:16p13.3
131	97		229294_at	JPH3 Chr:16q24.3
132	41		206456_at	GABRA5 Chr:15q11.2-q12
133	82		224801_at	NDFIP2 Chr:13q22.2
134	96		229254_at	DKFZp761N1114 Chr:1q32.1
135	94		229029_at	--- ---
136	123		239357_at	--- ---
137	53		213280_at	GARNL4 Chr:17p13.3
138	88		227240_at	NGEF Chr:2q37
139	91		227702_at	CYP4X1 Chr:1p33
140	110		232305_at	HMGCLL1 Chr:6p12.1
141	131		241672_at	LOC400120 Chr:13q13.2

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:25:32

G17_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC