G17_using_S3

Super-paramagnetic Clustering of 141 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=42)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	21		204229_at	SLC17A7 Chr:19q13
2	26		204697_s_at	CHGA Chr:14q32
3	15		202712_s_at	CKMT1 Chr:15q15
4	28		204723_at	SCN3B Chr:11q24.1
5	52		212473_s_at	MICAL2 Chr:11p15.3
6	42		206552_s_at	TAC1 Chr:7q21-q22
7	46		209726_at	CA11 Chr:19q13.3
8	66		216086_at	SV2C Chr:5q13.3
9	20		204134_at	PDE2A Chr:11q13.3
10	69		219425_at	SULT4A1 Chr:22q13.2-q13.31
11	108		231489_x_at	--- ---
12	33	G283	205257_s_at	AMPH Chr:7p14-p13
13	13	G283	202260_s_at	STXBP1 Chr:9q34.1
14	23	G283	204339_s_at	RGS4 Chr:1q23.2
15	38	G283	206013_s_at	ACTL6 Chr:7q22
16	70	G283	219659_at	ATP8A2 Chr:13q12-13
17	39	G283	206196_s_at	RPIP8 Chr:17q21.31
18	19	G283	204081_at	NRGN Chr:11q24
19	4	G283	1555958_at	CRTAC1 Chr:10q22
20	56	G283	213921_at	SST Chr:3q28
21	36	G283	205691_at	SYNGR3 Chr:16p13
22	8	G283	1556366_s_at	FLJ33708 Chr:6p24.3
23	27	G283	204722_at	SCN3B Chr:11q24.1
24	32	G283	205113_at	NEF3 Chr:8p21
25	37	G283	205827_at	CCK Chr:3p22-p21.3
26	64	G283	214956_at	--- ---
27	74	G283	220359_s_at	ARPP-21 Chr:3p22.1
28	22	G283	204337_at	RGS4 Chr:1q23.2
29	2	G283	1553422_s_at	A2BP1 Chr:16p13.3
30	12	G283	202073_at	OPTN Chr:10p14
31	41	G283	206456_at	GABRA5 Chr:15q11.2-q12
32	58	G283	214098_at	KIAA1107 Chr:1p22.1
33	71	G283	219671_at	HPCAL4 Chr:1p34.2
34	1	G283	1552714_at	CREG2 Chr:2q12.1
35	3	G283	1553864_at	DKFZp761H2121 Chr:10q26.13
36	5	G283	1556095_at	UNC13C Chr:15q21.1
37	6	G283	1556096_s_at	UNC13C Chr:15q21.1
38	7	G283	1556351_at	HCN1 Chr:5p12
39	9	G283	1557122_s_at	--- ---
40	10	G283	1559545_at	--- ---
41	11	G283	1568612_at	GABRG2 Chr:5q31.1-q33.1
42	14	G283	202507_s_at	SNAP25 Chr:20p12-p11.2
43	16	G283	203798_s_at	VSNL1 Chr:2p24.3
44	17	G283	203998_s_at	SYT1 Chr:12cen-q21
45	24	G283	204465_s_at	INA Chr:10q24.33
46	25	G283	204546_at	KIAA0513 Chr:16q24.1
47	30	G283	204869_at	PCSK2 Chr:20p11.2
48	34	G283	205414_s_at	KIAA0672 Chr:17p12
49	35	G283	205635_at	HAPIP Chr:3q21.2
50	40	G283	206376_at	SLC6A15 Chr:12q21.3
51	43	G283	206678_at	GABRA1 Chr:5q34-q35
52	44	G283	206780_at	GAD2 Chr:10p11.23
53	48	G283	210040_at	SLC12A5 Chr:20q13.12
54	49	G283	210227_at	DLGAP2 Chr:8p23
55	51	G283	210721_s_at	PAK7 Chr:20p12
56	53	G283	213280_at	GARNL4 Chr:17p13.3
57	120	G283	237384_x_at	--- ---
58	54	G283	213307_at	SHANK2 Chr:11q13.2
59	55	G283	213904_at	--- ---
60	57	G283	214044_at	RYR2 Chr:1q42.1-q43
61	60	G283	214230_at	CDC42 Chr:1p36.1
62	61	G283	214376_at	--- ---
63	62	G283	214811_at	KIAA0318 Chr:12q24.33
64	63	G283	214945_at	NY-REN-7 Chr:5q35.3
65	65	G283	215241_at	TMEM16C Chr:11p14.3
66	68	G283	219308_s_at	AK5 Chr:1p31
67	72	G283	219937_at	TRHDE Chr:12q15-q21
68	73	G283	220030_at	STYK1 Chr:12p13.31
69	75	G283	221217_s_at	A2BP1 Chr:16p13.3
70	77	G283	223529_at	SYT4 Chr:18q12.3
71	79	G283	224164_at	TPM3 Chr:1q21.2
72	80	G283	224209_s_at	GDA Chr:9q21.11-21.33
73	31	G283	204953_at	SNAP91 Chr:6q15
74	47	G283	210016_at	MYT1L Chr:2p25.3
75	59	G283	214111_at	OPCML Chr:11q25
76	82	G283	224801_at	NDFIP2 Chr:13q22.2
77	92	G283	227830_at	GABRB3 Chr:15q11.2-q12
78	121	G283	238786_at	--- ---
79	83	G283	225111_s_at	NAPB Chr:20p12.3-p11.21
80	84	G283	226086_at	SYT13 Chr:11p12-p11
81	67	G283	218623_at	HMP19 Chr:5q35.2
82	89	G283	227641_at	MGC33974 Chr:16p13.3
83	97	G283	229294_at	JPH3 Chr:16q24.3
84	90	G283	227690_at	GABRB3 Chr:15q11.2-q12
85	91	G283	227702_at	CYP4X1 Chr:1p33
86	93	G283	228262_at	FLJ14503 Chr:xp22.13
87	94	G283	229029_at	--- ---
88	96	G283	229254_at	DKFZp761N1114 Chr:1q32.1
89	98	G283	229300_at	--- ---
90	99	G283	229724_at	GABRB3 Chr:15q11.2-q12
91	100	G283	230076_at	FLJ10156 Chr:17p13.2
92	101	G283	230137_at	FLJ30834 Chr:4q27
93	103	G283	230262_at	--- ---
94	105	G283	230551_at	--- ---
95	106	G283	230698_at	--- ---
96	107	G283	230932_at	--- ---
97	109	G283	231986_at	RIMS1 Chr:6q12-q13
98	110	G283	232305_at	HMGCLL1 Chr:6p12.1
99	111	G283	232411_at	--- ---
100	112	G283	232426_at	--- ---
101	113	G283	233002_at	KIAA1622 Chr:14q32.2
102	115	G283	235066_at	MAP4 Chr:3p21
103	116	G283	235230_at	--- ---
104	18	G283	203999_at	SYT1 Chr:12cen-q21
105	117	G283	236166_at	LOC285147 Chr:2p25.2
106	122	G283	238966_at	BRUNOL4 Chr:18q12
107	123	G283	239357_at	--- ---
108	124	G283	239579_at	ABHD7 Chr:1p22.1
109	125	G283	239671_at	--- ---
110	126	G283	239678_at	--- ---
111	81	G283	224650_at	MAL2 Chr:8q23
112	127	G283	239765_at	--- ---
113	128	G283	239767_at	--- ---
114	130	G283	241399_at	TAFA2 Chr:12q13.3-q14.1
115	131	G283	241672_at	LOC400120 Chr:13q13.2
116	132	G283	241807_x_at	--- ---
117	134	G283	242344_at	--- ---
118	135	G283	242404_at	--- ---
119	136	G283	242999_at	ARHGEF7 Chr:13q34
120	137	G283	243163_at	--- ---
121	138	G283	243666_at	BRUNOL4 Chr:18q12
122	139	G283	243929_at	--- ---
123	140	G283	244118_at	GABRA1 Chr:5q34-q35
124	141	G283	52837_at	KIAA1644 Chr:22q13
125	133	G283	242193_at	--- Chr:8q12.3
126	86	G283	227053_at	PACSIN1 Chr:6p21.3
127	114	G283	233139_at	--- ---
128	95	G283	229039_at	SYN2 Chr:3p25
129	104	G283	230497_at	BRUNOL5 Chr:19p13
130	102	G283	230255_at	GABRD Chr:1p36.3
131	45	G283	209556_at	NCDN Chr:1p34.3
132	88	G283	227240_at	NGEF Chr:2q37
133	129	G283	241382_at	--- ---
134	50		210247_at	SYN2 Chr:3p25
135	78		223654_s_at	BRUNOL4 Chr:18q12
136	85		226382_at	LOC283070 Chr:10p14
137	118		236448_at	UNC5A Chr:5q35.3
138	119		236456_at	PTPN5 Chr:11p15.1
139	29		204763_s_at	GNAO1 Chr:16q13
140	87		227226_at	C6orf117 Chr:6q15
141	76		223500_at	CPLX1 Chr:4p16.3

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	42
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:21:47

G17_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=42)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC