G17_using_S1

Super-paramagnetic Clustering of 141 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	23		204339_s_at	RGS4 Chr:1q23.2
2	22		204337_at	RGS4 Chr:1q23.2
3	2		1553422_s_at	A2BP1 Chr:16p13.3
4	75		221217_s_at	A2BP1 Chr:16p13.3
5	92		227830_at	GABRB3 Chr:15q11.2-q12
6	90		227690_at	GABRB3 Chr:15q11.2-q12
7	99		229724_at	GABRB3 Chr:15q11.2-q12
8	137		243163_at	--- ---
9	44	G277 G278 G280 G282	206780_at	GAD2 Chr:10p11.23
10	93	G277 G278 G280 G282	228262_at	FLJ14503 Chr:xp22.13
11	9	G277 G278 G280 G282	1557122_s_at	--- ---
12	129	G277 G278 G280 G282	241382_at	--- ---
13	95	G277 G278 G280 G282	229039_at	SYN2 Chr:3p25
14	70	G277 G278 G280 G282	219659_at	ATP8A2 Chr:13q12-13
15	102	G277 G278 G280 G282	230255_at	GABRD Chr:1p36.3
16	127	G277 G278 G280 G282	239765_at	--- ---
17	134	G277 G278 G280 G282	242344_at	--- ---
18	83	G277 G278 G280 G282	225111_s_at	NAPB Chr:20p12.3-p11.21
19	64	G277 G278 G280 G282	214956_at	--- ---
20	128	G277 G278 G280 G282	239767_at	--- ---
21	18	G277 G278 G280 G282	203999_at	SYT1 Chr:12cen-q21
22	119	G277 G278 G280 G282	236456_at	PTPN5 Chr:11p15.1
23	26	G277 G278 G280 G282	204697_s_at	CHGA Chr:14q32
24	32	G277 G278 G280 G282	205113_at	NEF3 Chr:8p21
25	48	G277 G278 G280 G282	210040_at	SLC12A5 Chr:20q13.12
26	62	G277 G278 G280 G282	214811_at	KIAA0318 Chr:12q24.33
27	114	G277 G278 G280 G282	233139_at	--- ---
28	108	G277 G278 G280 G282	231489_x_at	--- ---
29	16	G277 G278 G280 G282	203798_s_at	VSNL1 Chr:2p24.3
30	1	G277 G278 G280 G282	1552714_at	CREG2 Chr:2q12.1
31	46	G277 G278 G280 G282	209726_at	CA11 Chr:19q13.3
32	50	G277 G278 G280 G282	210247_at	SYN2 Chr:3p25
33	117	G277 G278 G280 G282	236166_at	LOC285147 Chr:2p25.2
34	88	G277 G278 G280 G282	227240_at	NGEF Chr:2q37
35	21	G278 G280 G282	204229_at	SLC17A7 Chr:19q13
36	63	G278 G280 G282	214945_at	NY-REN-7 Chr:5q35.3
37	19	G278 G280 G282	204081_at	NRGN Chr:11q24
38	45	G278 G280 G282	209556_at	NCDN Chr:1p34.3
39	86	G278 G280 G282	227053_at	PACSIN1 Chr:6p21.3
40	36	G278 G280 G282	205691_at	SYNGR3 Chr:16p13
41	10	G278 G280 G282	1559545_at	--- ---
42	100	G278 G280 G282	230076_at	FLJ10156 Chr:17p13.2
43	85	G278 G280 G282	226382_at	LOC283070 Chr:10p14
44	57	G278 G280 G282	214044_at	RYR2 Chr:1q42.1-q43
45	71	G278 G280 G282	219671_at	HPCAL4 Chr:1p34.2
46	65	G278 G280 G282	215241_at	TMEM16C Chr:11p14.3
47	132	G278 G280 G282	241807_x_at	--- ---
48	6	G278 G280 G282	1556096_s_at	UNC13C Chr:15q21.1
49	141	G278 G280 G282	52837_at	KIAA1644 Chr:22q13
50	140	G276 G279 G280 G282	244118_at	GABRA1 Chr:5q34-q35
51	81	G276 G279 G280 G282	224650_at	MAL2 Chr:8q23
52	43	G276 G279 G280 G282	206678_at	GABRA1 Chr:5q34-q35
53	3	G276 G279 G280 G282	1553864_at	DKFZp761H2121 Chr:10q26.13
54	49	G276 G279 G280 G282	210227_at	DLGAP2 Chr:8p23
55	113	G276 G279 G280 G282	233002_at	KIAA1622 Chr:14q32.2
56	41	G276 G279 G280 G282	206456_at	GABRA5 Chr:15q11.2-q12
57	37	G276 G279 G280 G282	205827_at	CCK Chr:3p22-p21.3
58	124	G276 G279 G280 G282	239579_at	ABHD7 Chr:1p22.1
59	17	G276 G279 G280 G282	203998_s_at	SYT1 Chr:12cen-q21
60	74	G276 G279 G280 G282	220359_s_at	ARPP-21 Chr:3p22.1
61	25	G276 G279 G280 G282	204546_at	KIAA0513 Chr:16q24.1
62	112	G276 G279 G280 G282	232426_at	--- ---
63	69	G276 G279 G280 G282	219425_at	SULT4A1 Chr:22q13.2-q13.31
64	7	G276 G279 G280 G282	1556351_at	HCN1 Chr:5p12
65	34	G276 G279 G280 G282	205414_s_at	KIAA0672 Chr:17p12
66	35	G276 G279 G280 G282	205635_at	HAPIP Chr:3q21.2
67	8	G279 G280 G282	1556366_s_at	FLJ33708 Chr:6p24.3
68	72	G279 G280 G282	219937_at	TRHDE Chr:12q15-q21
69	5	G279 G280 G282	1556095_at	UNC13C Chr:15q21.1
70	73	G279 G280 G282	220030_at	STYK1 Chr:12p13.31
71	91	G279 G280 G282	227702_at	CYP4X1 Chr:1p33
72	101	G279 G280 G282	230137_at	FLJ30834 Chr:4q27
73	110	G279 G280 G282	232305_at	HMGCLL1 Chr:6p12.1
74	120	G279 G280 G282	237384_x_at	--- ---
75	30	G279 G280 G282	204869_at	PCSK2 Chr:20p11.2
76	135	G279 G280 G282	242404_at	--- ---
77	131	G279 G280 G282	241672_at	LOC400120 Chr:13q13.2
78	40	G279 G280 G282	206376_at	SLC6A15 Chr:12q21.3
79	121	G279 G280 G282	238786_at	--- ---
80	56	G279 G280 G282	213921_at	SST Chr:3q28
81	111	G279 G280 G282	232411_at	--- ---
82	80	G280 G282	224209_s_at	GDA Chr:9q21.11-21.33
83	106	G280 G282	230698_at	--- ---
84	105	G280 G282	230551_at	--- ---
85	130	G280 G282	241399_at	TAFA2 Chr:12q13.3-q14.1
86	66	G280 G282	216086_at	SV2C Chr:5q13.3
87	87	G280 G282	227226_at	C6orf117 Chr:6q15
88	14	G282	202507_s_at	SNAP25 Chr:20p12-p11.2
89	11	G282	1568612_at	GABRG2 Chr:5q31.1-q33.1
90	84	G282	226086_at	SYT13 Chr:11p12-p11
91	33	G282	205257_s_at	AMPH Chr:7p14-p13
92	122	G281 G282	238966_at	BRUNOL4 Chr:18q12
93	78	G281 G282	223654_s_at	BRUNOL4 Chr:18q12
94	138	G281 G282	243666_at	BRUNOL4 Chr:18q12
95	77	G281 G282	223529_at	SYT4 Chr:18q12.3
96	118	G281 G282	236448_at	UNC5A Chr:5q35.3
97	27	G281 G282	204722_at	SCN3B Chr:11q24.1
98	28	G281 G282	204723_at	SCN3B Chr:11q24.1
99	20	G281 G282	204134_at	PDE2A Chr:11q13.3
100	89	G281 G282	227641_at	MGC33974 Chr:16p13.3
101	39	G281 G282	206196_s_at	RPIP8 Chr:17q21.31
102	47	G281 G282	210016_at	MYT1L Chr:2p25.3
103	103	G281 G282	230262_at	--- ---
104	98	G281 G282	229300_at	--- ---
105	15	G281 G282	202712_s_at	CKMT1 Chr:15q15
106	13	G281 G282	202260_s_at	STXBP1 Chr:9q34.1
107	54	G281 G282	213307_at	SHANK2 Chr:11q13.2
108	76	G281 G282	223500_at	CPLX1 Chr:4p16.3
109	115	G281 G282	235066_at	MAP4 Chr:3p21
110	79	G282	224164_at	TPM3 Chr:1q21.2
111	60	G282	214230_at	CDC42 Chr:1p36.1
112	136	G282	242999_at	ARHGEF7 Chr:13q34
113	51	G282	210721_s_at	PAK7 Chr:20p12
114	29	G282	204763_s_at	GNAO1 Chr:16q13
115	97	G282	229294_at	JPH3 Chr:16q24.3
116	58	G282	214098_at	KIAA1107 Chr:1p22.1
117	109	G282	231986_at	RIMS1 Chr:6q12-q13
118	53	G282	213280_at	GARNL4 Chr:17p13.3
119	4	G282	1555958_at	CRTAC1 Chr:10q22
120	67	G282	218623_at	HMP19 Chr:5q35.2
121	104	G282	230497_at	BRUNOL5 Chr:19p13
122	126	G282	239678_at	--- ---
123	59	G282	214111_at	OPCML Chr:11q25
124	116	G282	235230_at	--- ---
125	107	G282	230932_at	--- ---
126	125	G282	239671_at	--- ---
127	133	G282	242193_at	--- Chr:8q12.3
128	24	G282	204465_s_at	INA Chr:10q24.33
129	38	G282	206013_s_at	ACTL6 Chr:7q22
130	42	G282	206552_s_at	TAC1 Chr:7q21-q22
131	94	G282	229029_at	--- ---
132	31		204953_at	SNAP91 Chr:6q15
133	55		213904_at	--- ---
134	61		214376_at	--- ---
135	12		202073_at	OPTN Chr:10p14
136	68		219308_s_at	AK5 Chr:1p31
137	82		224801_at	NDFIP2 Chr:13q22.2
138	96		229254_at	DKFZp761N1114 Chr:1q32.1
139	123		239357_at	--- ---
140	52		212473_s_at	MICAL2 Chr:11p15.3
141	139		243929_at	--- ---

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:18:06

G17_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC