G16_using_S6

Super-paramagnetic Clustering of 49 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	7		204471_at	GAP43 Chr:3q13.1-q13.2
2	33		216963_s_at	GAP43 Chr:3q13.1-q13.2
3	1		1555471_a_at	FMN2 Chr:1q43
4	38		223618_at	FMN2 Chr:1q43
5	10		206826_at	PMP2 Chr:8q21.3-q22.1
6	48		235127_at	PMP2 Chr:8q21.3-q22.1
7	17	G275	209469_at	GPM6A Chr:4q34
8	18	G275	209470_s_at	GPM6A Chr:4q34
9	20	G275	209598_at	PNMA2 Chr:8p21.1
10	39	G275	225491_at	SLC1A2 Chr:11p13-p12
11	46	G275	229053_at	LOC51760 Chr:16p13.11
12	9	G275	205475_at	SCRG1 Chr:4q31-q32
13	14	G275	209170_s_at	GPM6B Chr:xp22.2
14	35	G275	218899_s_at	BAALC Chr:8q22.3
15	36	G275	222780_s_at	BAALC Chr:8q22.3
16	11	G275	209167_at	GPM6B Chr:Xp22.2
17	3	G275	203540_at	GFAP Chr:17q21
18	6	G275	204469_at	PTPRZ1 Chr:7q31.3
19	8	G275	205433_at	BCHE Chr:3q26.1-q26.2
20	25	G275	211596_s_at	LRIG1 Chr:3p14
21	31	G275	214023_x_at	MGC8685 Chr:6p25
22	12	G275	209168_at	GPM6B Chr:xp22.2
23	42	G275	228375_at	IGSF11 Chr:3q13.33
24	13	G275	209169_at	GPM6B Chr:xp22.2
25	30	G275	213849_s_at	PPP2R2B Chr:5q31-5q32
26	24	G275	209859_at	TRIM9 Chr:14q22.1
27	27	G275	212070_at	GPR56 Chr:16q13
28	43	G275	228546_at	DPP6 Chr:7q36.2-q36.3
29	34	G275	218087_s_at	SORBS1 Chr:10q23.3-q24.1
30	21	G275	209617_s_at	CTNND2 Chr:5p15.2
31	22	G275	209618_at	CTNND2 Chr:5p15.2
32	2	G275	202986_at	ARNT2 Chr:15q24
33	26	G275	212062_at	ATP9A Chr:20q13.11-q13.2
34	37	G275	222803_at	PRTFDC1 Chr:10p12.31
35	47	G275	231898_x_at	SOX2OT Chr:3q26.3-q27
36	32	G275	216033_s_at	FYN Chr:6q21
37	28	G275	212486_s_at	FYN Chr:6q21
38	15		209291_at	ID4 Chr:6p22-p21
39	41		226933_s_at	ID4 Chr:6p22-p21
40	16		209292_at	ID4 Chr:6p22-p21
41	49		44783_s_at	HEY1 Chr:8q21
42	29		213721_at	SOX2 Chr:3q26.3-q27
43	45		228780_at	POU3F3 Chr:2q12.1
44	4		203562_at	FEZ1 Chr:11q24.2
45	23		209686_at	S100B Chr:21q22.3
46	5		203632_s_at	GPRC5B Chr:16p12
47	19		209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
48	44		228581_at	KCNJ10 Chr:1q22-q23
49	40		226627_at	38238 Chr:5q31

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:14:03

G16_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC