G16_using_S4

Super-paramagnetic Clustering of 49 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	7		204471_at	GAP43 Chr:3q13.1-q13.2
2	33		216963_s_at	GAP43 Chr:3q13.1-q13.2
3	34		218087_s_at	SORBS1 Chr:10q23.3-q24.1
4	16		209292_at	ID4 Chr:6p22-p21
5	15		209291_at	ID4 Chr:6p22-p21
6	41		226933_s_at	ID4 Chr:6p22-p21
7	8		205433_at	BCHE Chr:3q26.1-q26.2
8	6		204469_at	PTPRZ1 Chr:7q31.3
9	31		214023_x_at	MGC8685 Chr:6p25
10	27		212070_at	GPR56 Chr:16q13
11	49		44783_s_at	HEY1 Chr:8q21
12	24		209859_at	TRIM9 Chr:14q22.1
13	48		235127_at	PMP2 Chr:8q21.3-q22.1
14	10		206826_at	PMP2 Chr:8q21.3-q22.1
15	28		212486_s_at	FYN Chr:6q21
16	39		225491_at	SLC1A2 Chr:11p13-p12
17	32		216033_s_at	FYN Chr:6q21
18	35		218899_s_at	BAALC Chr:8q22.3
19	36		222780_s_at	BAALC Chr:8q22.3
20	5	G273	203632_s_at	GPRC5B Chr:16p12
21	19	G273	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
22	4	G273	203562_at	FEZ1 Chr:11q24.2
23	44	G273	228581_at	KCNJ10 Chr:1q22-q23
24	9	G273	205475_at	SCRG1 Chr:4q31-q32
25	23	G273	209686_at	S100B Chr:21q22.3
26	17	G272 G273	209469_at	GPM6A Chr:4q34
27	18	G272 G273	209470_s_at	GPM6A Chr:4q34
28	45	G272 G273	228780_at	POU3F3 Chr:2q12.1
29	20	G272 G273	209598_at	PNMA2 Chr:8p21.1
30	46	G272 G273	229053_at	LOC51760 Chr:16p13.11
31	11	G272 G273	209167_at	GPM6B Chr:Xp22.2
32	13	G272 G273	209169_at	GPM6B Chr:xp22.2
33	14	G272 G273	209170_s_at	GPM6B Chr:xp22.2
34	12	G272 G273	209168_at	GPM6B Chr:xp22.2
35	40	G272 G273	226627_at	38238 Chr:5q31
36	3	G272 G273	203540_at	GFAP Chr:17q21
37	22	G272 G273	209618_at	CTNND2 Chr:5p15.2
38	21	G272 G273	209617_s_at	CTNND2 Chr:5p15.2
39	25	G272 G273	211596_s_at	LRIG1 Chr:3p14
40	42	G272 G273	228375_at	IGSF11 Chr:3q13.33
41	30	G272 G273	213849_s_at	PPP2R2B Chr:5q31-5q32
42	26	G272 G273	212062_at	ATP9A Chr:20q13.11-q13.2
43	43	G272 G273	228546_at	DPP6 Chr:7q36.2-q36.3
44	29	G273	213721_at	SOX2 Chr:3q26.3-q27
45	2		202986_at	ARNT2 Chr:15q24
46	38		223618_at	FMN2 Chr:1q43
47	1		1555471_a_at	FMN2 Chr:1q43
48	37		222803_at	PRTFDC1 Chr:10p12.31
49	47		231898_x_at	SOX2OT Chr:3q26.3-q27

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:10:08

G16_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC