G16_using_S3

Super-paramagnetic Clustering of 49 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13		209169_at	GPM6B Chr:xp22.2
2	16		209292_at	ID4 Chr:6p22-p21
3	45		228780_at	POU3F3 Chr:2q12.1
4	9	G269 G270	205475_at	SCRG1 Chr:4q31-q32
5	12	G269 G270	209168_at	GPM6B Chr:xp22.2
6	14	G269 G270	209170_s_at	GPM6B Chr:xp22.2
7	15	G269 G270	209291_at	ID4 Chr:6p22-p21
8	29	G269 G270	213721_at	SOX2 Chr:3q26.3-q27
9	4	G269 G270	203562_at	FEZ1 Chr:11q24.2
10	11	G269 G270	209167_at	GPM6B Chr:Xp22.2
11	19	G269 G270	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
12	23	G269 G270	209686_at	S100B Chr:21q22.3
13	27	G269 G270	212070_at	GPR56 Chr:16q13
14	3	G269 G270	203540_at	GFAP Chr:17q21
15	28	G269 G270	212486_s_at	FYN Chr:6q21
16	5	G269 G270	203632_s_at	GPRC5B Chr:16p12
17	44	G269 G270	228581_at	KCNJ10 Chr:1q22-q23
18	47	G269 G270	231898_x_at	SOX2OT Chr:3q26.3-q27
19	37	G269 G270	222803_at	PRTFDC1 Chr:10p12.31
20	48	G269 G270	235127_at	PMP2 Chr:8q21.3-q22.1
21	32	G269 G270	216033_s_at	FYN Chr:6q21
22	6	G269 G270	204469_at	PTPRZ1 Chr:7q31.3
23	25	G269 G270	211596_s_at	LRIG1 Chr:3p14
24	10	G269 G270	206826_at	PMP2 Chr:8q21.3-q22.1
25	34	G269 G270	218087_s_at	SORBS1 Chr:10q23.3-q24.1
26	31	G270	214023_x_at	MGC8685 Chr:6p25
27	2	G270	202986_at	ARNT2 Chr:15q24
28	36	G270	222780_s_at	BAALC Chr:8q22.3
29	7	G270	204471_at	GAP43 Chr:3q13.1-q13.2
30	8	G270	205433_at	BCHE Chr:3q26.1-q26.2
31	33	G270	216963_s_at	GAP43 Chr:3q13.1-q13.2
32	41	G270	226933_s_at	ID4 Chr:6p22-p21
33	30	G270	213849_s_at	PPP2R2B Chr:5q31-5q32
34	42	G270	228375_at	IGSF11 Chr:3q13.33
35	21	G271	209617_s_at	CTNND2 Chr:5p15.2
36	17	G271	209469_at	GPM6A Chr:4q34
37	18	G271	209470_s_at	GPM6A Chr:4q34
38	1	G271	1555471_a_at	FMN2 Chr:1q43
39	38	G271	223618_at	FMN2 Chr:1q43
40	46	G271	229053_at	LOC51760 Chr:16p13.11
41	24	G271	209859_at	TRIM9 Chr:14q22.1
42	26	G271	212062_at	ATP9A Chr:20q13.11-q13.2
43	22	G271	209618_at	CTNND2 Chr:5p15.2
44	35	G271	218899_s_at	BAALC Chr:8q22.3
45	20	G271	209598_at	PNMA2 Chr:8p21.1
46	49	G271	44783_s_at	HEY1 Chr:8q21
47	43	G271	228546_at	DPP6 Chr:7q36.2-q36.3
48	39	G271	225491_at	SLC1A2 Chr:11p13-p12
49	40	G271	226627_at	38238 Chr:5q31

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:08:08

G16_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC