G16_using_S2

Super-paramagnetic Clustering of 49 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	32		216033_s_at	FYN Chr:6q21
2	2		202986_at	ARNT2 Chr:15q24
3	47		231898_x_at	SOX2OT Chr:3q26.3-q27
4	8		205433_at	BCHE Chr:3q26.1-q26.2
5	27		212070_at	GPR56 Chr:16q13
6	43		228546_at	DPP6 Chr:7q36.2-q36.3
7	6		204469_at	PTPRZ1 Chr:7q31.3
8	30		213849_s_at	PPP2R2B Chr:5q31-5q32
9	20		209598_at	PNMA2 Chr:8p21.1
10	13		209169_at	GPM6B Chr:xp22.2
11	38		223618_at	FMN2 Chr:1q43
12	39	G268	225491_at	SLC1A2 Chr:11p13-p12
13	5	G268	203632_s_at	GPRC5B Chr:16p12
14	40	G268	226627_at	38238 Chr:5q31
15	45	G268	228780_at	POU3F3 Chr:2q12.1
16	1	G268	1555471_a_at	FMN2 Chr:1q43
17	12	G268	209168_at	GPM6B Chr:xp22.2
18	3	G268	203540_at	GFAP Chr:17q21
19	10	G268	206826_at	PMP2 Chr:8q21.3-q22.1
20	19	G268	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
21	48	G268	235127_at	PMP2 Chr:8q21.3-q22.1
22	31	G268	214023_x_at	MGC8685 Chr:6p25
23	14	G268	209170_s_at	GPM6B Chr:xp22.2
24	34	G268	218087_s_at	SORBS1 Chr:10q23.3-q24.1
25	7	G268	204471_at	GAP43 Chr:3q13.1-q13.2
26	33	G268	216963_s_at	GAP43 Chr:3q13.1-q13.2
27	42	G268	228375_at	IGSF11 Chr:3q13.33
28	11	G268	209167_at	GPM6B Chr:Xp22.2
29	15	G268	209291_at	ID4 Chr:6p22-p21
30	4	G268	203562_at	FEZ1 Chr:11q24.2
31	21	G268	209617_s_at	CTNND2 Chr:5p15.2
32	26	G268	212062_at	ATP9A Chr:20q13.11-q13.2
33	37	G268	222803_at	PRTFDC1 Chr:10p12.31
34	16	G268	209292_at	ID4 Chr:6p22-p21
35	17	G268	209469_at	GPM6A Chr:4q34
36	9	G268	205475_at	SCRG1 Chr:4q31-q32
37	18	G268	209470_s_at	GPM6A Chr:4q34
38	41	G268	226933_s_at	ID4 Chr:6p22-p21
39	29	G268	213721_at	SOX2 Chr:3q26.3-q27
40	35		218899_s_at	BAALC Chr:8q22.3
41	23		209686_at	S100B Chr:21q22.3
42	22		209618_at	CTNND2 Chr:5p15.2
43	24		209859_at	TRIM9 Chr:14q22.1
44	25		211596_s_at	LRIG1 Chr:3p14
45	36		222780_s_at	BAALC Chr:8q22.3
46	44		228581_at	KCNJ10 Chr:1q22-q23
47	28		212486_s_at	FYN Chr:6q21
48	46		229053_at	LOC51760 Chr:16p13.11
49	49		44783_s_at	HEY1 Chr:8q21

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:05:49

G16_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC