G16_using_S1

Super-paramagnetic Clustering of 49 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	38		223618_at	FMN2 Chr:1q43
2	1		1555471_a_at	FMN2 Chr:1q43
3	15		209291_at	ID4 Chr:6p22-p21
4	41		226933_s_at	ID4 Chr:6p22-p21
5	16		209292_at	ID4 Chr:6p22-p21
6	6	G266 G267	204469_at	PTPRZ1 Chr:7q31.3
7	31	G266 G267	214023_x_at	MGC8685 Chr:6p25
8	9	G266 G267	205475_at	SCRG1 Chr:4q31-q32
9	14	G266 G267	209170_s_at	GPM6B Chr:xp22.2
10	11	G266 G267	209167_at	GPM6B Chr:Xp22.2
11	8	G266 G267	205433_at	BCHE Chr:3q26.1-q26.2
12	49	G266 G267	44783_s_at	HEY1 Chr:8q21
13	3	G266 G267	203540_at	GFAP Chr:17q21
14	37	G266 G267	222803_at	PRTFDC1 Chr:10p12.31
15	12	G266 G267	209168_at	GPM6B Chr:xp22.2
16	13	G266 G267	209169_at	GPM6B Chr:xp22.2
17	34	G266 G267	218087_s_at	SORBS1 Chr:10q23.3-q24.1
18	17	G266 G267	209469_at	GPM6A Chr:4q34
19	18	G266 G267	209470_s_at	GPM6A Chr:4q34
20	35	G266 G267	218899_s_at	BAALC Chr:8q22.3
21	36	G266 G267	222780_s_at	BAALC Chr:8q22.3
22	24	G266 G267	209859_at	TRIM9 Chr:14q22.1
23	27	G266 G267	212070_at	GPR56 Chr:16q13
24	23	G266 G267	209686_at	S100B Chr:21q22.3
25	42	G267	228375_at	IGSF11 Chr:3q13.33
26	21	G267	209617_s_at	CTNND2 Chr:5p15.2
27	22	G267	209618_at	CTNND2 Chr:5p15.2
28	26	G267	212062_at	ATP9A Chr:20q13.11-q13.2
29	2	G267	202986_at	ARNT2 Chr:15q24
30	20	G267	209598_at	PNMA2 Chr:8p21.1
31	39	G267	225491_at	SLC1A2 Chr:11p13-p12
32	43	G267	228546_at	DPP6 Chr:7q36.2-q36.3
33	46	G267	229053_at	LOC51760 Chr:16p13.11
34	30	G267	213849_s_at	PPP2R2B Chr:5q31-5q32
35	40	G267	226627_at	38238 Chr:5q31
36	25	G267	211596_s_at	LRIG1 Chr:3p14
37	45	G267	228780_at	POU3F3 Chr:2q12.1
38	29	G267	213721_at	SOX2 Chr:3q26.3-q27
39	48		235127_at	PMP2 Chr:8q21.3-q22.1
40	10		206826_at	PMP2 Chr:8q21.3-q22.1
41	32		216033_s_at	FYN Chr:6q21
42	28		212486_s_at	FYN Chr:6q21
43	4		203562_at	FEZ1 Chr:11q24.2
44	47		231898_x_at	SOX2OT Chr:3q26.3-q27
45	5		203632_s_at	GPRC5B Chr:16p12
46	19		209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
47	44		228581_at	KCNJ10 Chr:1q22-q23
48	7		204471_at	GAP43 Chr:3q13.1-q13.2
49	33		216963_s_at	GAP43 Chr:3q13.1-q13.2

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:03:44

G16_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC