G15_using_S6

Super-paramagnetic Clustering of 108 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	36		204834_at	FGL2 Chr:7q11.23
2	4		1552386_at	FLJ33641 Chr:5q12.1
3	95		227265_at	--- ---
4	29		204150_at	STAB1 Chr:3p21.31
5	108		38487_at	STAB1 Chr:3p21.31
6	22		203305_at	F13A1 Chr:6p25.3-p24.3
7	11		201487_at	CTSC Chr:11q14.1-q14.3
8	92		225646_at	CTSC Chr:11q14.1-q14.3
9	93		225647_s_at	CTSC Chr:11q14.1-q14.3
10	63		213537_at	HLA-DPA1 Chr:6p21.3
11	58		211990_at	HLA-DPA1 Chr:6p21.3
12	38	G265	204971_at	CSTA Chr:3q21
13	98	G265	228532_at	MGC24133 Chr:1p13.2
14	55	G265	211654_x_at	HLA-DQB1 Chr:6p21.3
15	62	G265	212998_x_at	HLA-DQB1 Chr:6p21.3
16	40	G265	205997_at	ADAM28 Chr:8p21.2
17	85	G265	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
18	100	G265	229723_at	TAGAP Chr:6q25.3
19	57	G265	211742_s_at	EVI2B Chr:17q11.2
20	88	G265	223620_at	GPR34 Chr:xp11.4-p11.3
21	54	G265	211429_s_at	--- ---
22	16	G265	202833_s_at	SERPINA1 Chr:14q32.1
23	71	G265	216950_s_at	FCGR1A Chr:1q21.2-q21.3
24	66	G265	214511_x_at	FCGR1A Chr:1q21.2-q21.3
25	107	G265	232843_s_at	DOCK8 Chr:9p24.3
26	91	G265	225502_at	DOCK8 Chr:9p24.3
27	44	G265	207655_s_at	BLNK Chr:10q23.2-q23.33
28	50	G265	209823_x_at	HLA-DQB1 Chr:6p21.3
29	56	G265	211656_x_at	HLA-DQB1 Chr:6p21.3
30	9	G265	201137_s_at	HLA-DPB1 Chr:6p21.3
31	47	G265	208894_at	HLA-DRA Chr:6p21.3
32	53	G265	210982_s_at	HLA-DRA Chr:6p21.3
33	46	G265	208306_x_at	HLA-DRB3 Chr:6p21.3
34	48	G265	209312_x_at	HLA-DRB1 Chr:6p21.3
35	69	G265	215193_x_at	HLA-DRB3 Chr:6p21.3
36	34	G265	204670_x_at	HLA-DRB3 Chr:6p21.3
37	59	G265	211991_s_at	HLA-DPA1 Chr:6p21.3
38	61	G265	212671_s_at	HLA-DQA1 Chr:6p21.3
39	49	G265	209619_at	CD74 Chr:5q32
40	73	G265	217478_s_at	HLA-DMA Chr:6p21.3
41	79	G265	219607_s_at	MS4A4A Chr:11q12
42	27	G265	204007_at	FCGR3A Chr:1q23
43	37	G265	204959_at	MNDA Chr:1q22
44	86	G265	223280_x_at	MS4A6A Chr:11q12.1
45	89	G265	224356_x_at	MS4A6A Chr:11q12.1
46	1	G265	1552316_a_at	IMAP1 Chr:7q36.1
47	80	G265	219666_at	MS4A6A Chr:11q12.1
48	104	G265	230550_at	MS4A6A Chr:11q12.1
49	26	G265	204006_s_at	FCGR3A Chr:1q23
50	51	G265	210176_at	TLR1 Chr:4p14
51	65	G265	214467_at	GPR65 Chr:14q31-q32.1
52	8	G265	1555728_a_at	MS4A4A Chr:11q12
53	52	G264 G265	210314_x_at	TNFSF13 Chr:17p13.1
54	106	G264 G265	232617_at	CTSS Chr:1q21
55	99	G264 G265	229560_at	TLR8 Chr:xp22
56	19	G264 G265	202953_at	C1QB Chr:1p36.3-p34.1
57	90	G264 G265	225353_s_at	C1QG Chr:1p36.11
58	76	G264 G265	218232_at	C1QA Chr:1p36.3-p34.1
59	6	G264 G265	1554899_s_at	FCER1G Chr:1q23
60	30	G264 G265	204174_at	ALOX5AP Chr:13q12
61	31	G264 G265	204232_at	FCER1G Chr:1q23
62	45	G264 G265	208018_s_at	HCK Chr:20q11-q12
63	101	G264 G265	229937_x_at	LILRB1 Chr:19q13.4
64	12	G264 G265	201721_s_at	LAPTM5 Chr:1p34
65	10	G264 G265	201422_at	IFI30 Chr:19p13.1
66	78	G264 G265	219386_s_at	SLAMF8 Chr:1q23.1
67	72	G264 G265	217388_s_at	KYNU Chr:2q22.3
68	14	G264 G265	202546_at	VAMP8 Chr:2p12-p11.2
69	7	G264 G265	1555349_a_at	ITGB2 Chr:21q22.3
70	15	G264 G265	202803_s_at	ITGB2 Chr:21q22.3
71	23	G264 G265	203416_at	CD53 Chr:1p13
72	75	G264 G265	217983_s_at	RNASET2 Chr:6q27
73	32	G264 G265	204430_s_at	SLC2A5 Chr:1p36.2
74	17	G264 G265	202901_x_at	CTSS Chr:1q21
75	18	G264 G265	202902_s_at	CTSS Chr:1q21
76	60	G264 G265	212588_at	PTPRC Chr:1q31-q32
77	82	G264 G265	220330_s_at	SAMSN1 Chr:21q11
78	20	G264 G265	202957_at	HCLS1 Chr:3q13
79	28	G264 G265	204122_at	TYROBP Chr:19q13.1
80	67	G264 G265	214770_at	MSR1 Chr:8p22
81	35	G264 G265	204787_at	Z39IG Chr:xq12-q13.3
82	43	G264 G265	206584_at	LY96 Chr:8q13.3
83	83	G264 G265	220532_s_at	LR8 Chr:7q36.1
84	25	G265	203645_s_at	CD163 Chr:12p13.3
85	68	G265	215049_x_at	CD163 Chr:12p13.3
86	70	G265	216233_at	CD163 Chr:12p13.3
87	13	G265	201743_at	CD14 Chr:5q31.1
88	77	G265	218854_at	SART2 Chr:6q22
89	5	G265	1552807_a_at	SIGLEC10 Chr:19q13.3
90	21	G265	203104_at	CSF1R Chr:5q33-q35
91	24	G265	203561_at	FCGR2A Chr:1q23
92	64	G265	213566_at	RNASE6 Chr:14q11.2
93	41	G265	206111_at	RNASE2 Chr:14q24-q31
94	74	G265	217767_at	C3 Chr:19p13.3-p13.2
95	33	G265	204446_s_at	ALOX5 Chr:10q11.2
96	39	G265	205786_s_at	ITGAM Chr:16p11.2
97	94	G265	226068_at	SYK Chr:9q22
98	42	G265	206420_at	IGSF6 Chr:16p12-p13
99	103	G265	230391_at	--- ---
100	81	G265	220146_at	TLR7 Chr:xp22.3
101	97	G265	227346_at	ZNFN1A1 Chr:7p13-p11.1
102	3		1552367_a_at	SCIN Chr:7p21.3
103	2		1552365_at	SCIN Chr:7p21.3
104	96		227266_s_at	FYB Chr:5p13.1
105	87		223343_at	MS4A7 Chr:11q12
106	84		221210_s_at	NPL Chr:1q25
107	102		230252_at	GPR92 Chr:12p13.31
108	105		230925_at	APBB1IP Chr:10p12.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:01:49

G15_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC