G15_using_S5

Super-paramagnetic Clustering of 108 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	36		204834_at	FGL2 Chr:7q11.23
2	4		1552386_at	FLJ33641 Chr:5q12.1
3	95		227265_at	--- ---
4	50		209823_x_at	HLA-DQB1 Chr:6p21.3
5	56		211656_x_at	HLA-DQB1 Chr:6p21.3
6	55		211654_x_at	HLA-DQB1 Chr:6p21.3
7	62		212998_x_at	HLA-DQB1 Chr:6p21.3
8	3		1552367_a_at	SCIN Chr:7p21.3
9	2		1552365_at	SCIN Chr:7p21.3
10	63		213537_at	HLA-DPA1 Chr:6p21.3
11	58		211990_at	HLA-DPA1 Chr:6p21.3
12	54		211429_s_at	--- ---
13	16		202833_s_at	SERPINA1 Chr:14q32.1
14	29		204150_at	STAB1 Chr:3p21.31
15	108		38487_at	STAB1 Chr:3p21.31
16	22		203305_at	F13A1 Chr:6p25.3-p24.3
17	40		205997_at	ADAM28 Chr:8p21.2
18	100		229723_at	TAGAP Chr:6q25.3
19	57		211742_s_at	EVI2B Chr:17q11.2
20	85		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
21	88		223620_at	GPR34 Chr:xp11.4-p11.3
22	71	G263	216950_s_at	FCGR1A Chr:1q21.2-q21.3
23	66	G263	214511_x_at	FCGR1A Chr:1q21.2-q21.3
24	101	G263	229937_x_at	LILRB1 Chr:19q13.4
25	5	G262 G263	1552807_a_at	SIGLEC10 Chr:19q13.3
26	73	G262 G263	217478_s_at	HLA-DMA Chr:6p21.3
27	49	G262 G263	209619_at	CD74 Chr:5q32
28	47	G262 G263	208894_at	HLA-DRA Chr:6p21.3
29	53	G262 G263	210982_s_at	HLA-DRA Chr:6p21.3
30	46	G262 G263	208306_x_at	HLA-DRB3 Chr:6p21.3
31	69	G262 G263	215193_x_at	HLA-DRB3 Chr:6p21.3
32	48	G262 G263	209312_x_at	HLA-DRB1 Chr:6p21.3
33	34	G262 G263	204670_x_at	HLA-DRB3 Chr:6p21.3
34	59	G262 G263	211991_s_at	HLA-DPA1 Chr:6p21.3
35	9	G262 G263	201137_s_at	HLA-DPB1 Chr:6p21.3
36	61	G262 G263	212671_s_at	HLA-DQA1 Chr:6p21.3
37	11	G262 G263	201487_at	CTSC Chr:11q14.1-q14.3
38	52	G262 G263	210314_x_at	TNFSF13 Chr:17p13.1
39	106	G262 G263	232617_at	CTSS Chr:1q21
40	99	G262 G263	229560_at	TLR8 Chr:xp22
41	80	G262 G263	219666_at	MS4A6A Chr:11q12.1
42	1	G262 G263	1552316_a_at	IMAP1 Chr:7q36.1
43	104	G262 G263	230550_at	MS4A6A Chr:11q12.1
44	24	G262 G263	203561_at	FCGR2A Chr:1q23
45	8	G262 G263	1555728_a_at	MS4A4A Chr:11q12
46	86	G262 G263	223280_x_at	MS4A6A Chr:11q12.1
47	89	G262 G263	224356_x_at	MS4A6A Chr:11q12.1
48	43	G262 G263	206584_at	LY96 Chr:8q13.3
49	79	G262 G263	219607_s_at	MS4A4A Chr:11q12
50	37	G262 G263	204959_at	MNDA Chr:1q22
51	51	G262 G263	210176_at	TLR1 Chr:4p14
52	27	G262 G263	204007_at	FCGR3A Chr:1q23
53	65	G262 G263	214467_at	GPR65 Chr:14q31-q32.1
54	64	G262 G263	213566_at	RNASE6 Chr:14q11.2
55	26	G261 G262 G263	204006_s_at	FCGR3A Chr:1q23
56	7	G261 G262 G263	1555349_a_at	ITGB2 Chr:21q22.3
57	13	G261 G262 G263	201743_at	CD14 Chr:5q31.1
58	12	G261 G262 G263	201721_s_at	LAPTM5 Chr:1p34
59	15	G261 G262 G263	202803_s_at	ITGB2 Chr:21q22.3
60	20	G261 G262 G263	202957_at	HCLS1 Chr:3q13
61	17	G261 G262 G263	202901_x_at	CTSS Chr:1q21
62	18	G261 G262 G263	202902_s_at	CTSS Chr:1q21
63	60	G261 G262 G263	212588_at	PTPRC Chr:1q31-q32
64	30	G260 G261 G262 G263	204174_at	ALOX5AP Chr:13q12
65	23	G260 G261 G262 G263	203416_at	CD53 Chr:1p13
66	28	G260 G261 G262 G263	204122_at	TYROBP Chr:19q13.1
67	67	G260 G261 G262 G263	214770_at	MSR1 Chr:8p22
68	14	G260 G261 G262 G263	202546_at	VAMP8 Chr:2p12-p11.2
69	10	G260 G261 G262 G263	201422_at	IFI30 Chr:19p13.1
70	78	G260 G261 G262 G263	219386_s_at	SLAMF8 Chr:1q23.1
71	31	G260 G261 G262 G263	204232_at	FCER1G Chr:1q23
72	6	G260 G261 G262 G263	1554899_s_at	FCER1G Chr:1q23
73	45	G260 G261 G262 G263	208018_s_at	HCK Chr:20q11-q12
74	72	G260 G261 G262 G263	217388_s_at	KYNU Chr:2q22.3
75	19	G260 G261 G262 G263	202953_at	C1QB Chr:1p36.3-p34.1
76	90	G260 G261 G262 G263	225353_s_at	C1QG Chr:1p36.11
77	35	G260 G261 G262 G263	204787_at	Z39IG Chr:xq12-q13.3
78	32	G260 G261 G262 G263	204430_s_at	SLC2A5 Chr:1p36.2
79	75	G260 G261 G262 G263	217983_s_at	RNASET2 Chr:6q27
80	76	G260 G261 G262 G263	218232_at	C1QA Chr:1p36.3-p34.1
81	83	G262 G263	220532_s_at	LR8 Chr:7q36.1
82	21	G263	203104_at	CSF1R Chr:5q33-q35
83	92	G263	225646_at	CTSC Chr:11q14.1-q14.3
84	93	G263	225647_s_at	CTSC Chr:11q14.1-q14.3
85	25		203645_s_at	CD163 Chr:12p13.3
86	68		215049_x_at	CD163 Chr:12p13.3
87	70		216233_at	CD163 Chr:12p13.3
88	77		218854_at	SART2 Chr:6q22
89	102		230252_at	GPR92 Chr:12p13.31
90	81		220146_at	TLR7 Chr:xp22.3
91	97		227346_at	ZNFN1A1 Chr:7p13-p11.1
92	42		206420_at	IGSF6 Chr:16p12-p13
93	103		230391_at	--- ---
94	41		206111_at	RNASE2 Chr:14q24-q31
95	39		205786_s_at	ITGAM Chr:16p11.2
96	33		204446_s_at	ALOX5 Chr:10q11.2
97	74		217767_at	C3 Chr:19p13.3-p13.2
98	94		226068_at	SYK Chr:9q22
99	107		232843_s_at	DOCK8 Chr:9p24.3
100	91		225502_at	DOCK8 Chr:9p24.3
101	44		207655_s_at	BLNK Chr:10q23.2-q23.33
102	105		230925_at	APBB1IP Chr:10p12.2
103	96		227266_s_at	FYB Chr:5p13.1
104	87		223343_at	MS4A7 Chr:11q12
105	84		221210_s_at	NPL Chr:1q25
106	82		220330_s_at	SAMSN1 Chr:21q11
107	38		204971_at	CSTA Chr:3q21
108	98		228532_at	MGC24133 Chr:1p13.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:59:17

G15_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC