G15_using_S4

Super-paramagnetic Clustering of 108 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	36		204834_at	FGL2 Chr:7q11.23
2	4		1552386_at	FLJ33641 Chr:5q12.1
3	95		227265_at	--- ---
4	3		1552367_a_at	SCIN Chr:7p21.3
5	2		1552365_at	SCIN Chr:7p21.3
6	63		213537_at	HLA-DPA1 Chr:6p21.3
7	58		211990_at	HLA-DPA1 Chr:6p21.3
8	29		204150_at	STAB1 Chr:3p21.31
9	108		38487_at	STAB1 Chr:3p21.31
10	22		203305_at	F13A1 Chr:6p25.3-p24.3
11	54		211429_s_at	--- ---
12	16		202833_s_at	SERPINA1 Chr:14q32.1
13	92		225646_at	CTSC Chr:11q14.1-q14.3
14	11		201487_at	CTSC Chr:11q14.1-q14.3
15	93		225647_s_at	CTSC Chr:11q14.1-q14.3
16	50		209823_x_at	HLA-DQB1 Chr:6p21.3
17	56		211656_x_at	HLA-DQB1 Chr:6p21.3
18	55		211654_x_at	HLA-DQB1 Chr:6p21.3
19	62		212998_x_at	HLA-DQB1 Chr:6p21.3
20	49	G259	209619_at	CD74 Chr:5q32
21	47	G259	208894_at	HLA-DRA Chr:6p21.3
22	53	G259	210982_s_at	HLA-DRA Chr:6p21.3
23	46	G259	208306_x_at	HLA-DRB3 Chr:6p21.3
24	69	G259	215193_x_at	HLA-DRB3 Chr:6p21.3
25	48	G259	209312_x_at	HLA-DRB1 Chr:6p21.3
26	34	G259	204670_x_at	HLA-DRB3 Chr:6p21.3
27	59	G259	211991_s_at	HLA-DPA1 Chr:6p21.3
28	9	G259	201137_s_at	HLA-DPB1 Chr:6p21.3
29	61	G259	212671_s_at	HLA-DQA1 Chr:6p21.3
30	71	G258 G259	216950_s_at	FCGR1A Chr:1q21.2-q21.3
31	66	G258 G259	214511_x_at	FCGR1A Chr:1q21.2-q21.3
32	27	G258 G259	204007_at	FCGR3A Chr:1q23
33	37	G258 G259	204959_at	MNDA Chr:1q22
34	86	G258 G259	223280_x_at	MS4A6A Chr:11q12.1
35	89	G258 G259	224356_x_at	MS4A6A Chr:11q12.1
36	51	G258 G259	210176_at	TLR1 Chr:4p14
37	79	G258 G259	219607_s_at	MS4A4A Chr:11q12
38	65	G258 G259	214467_at	GPR65 Chr:14q31-q32.1
39	80	G258 G259	219666_at	MS4A6A Chr:11q12.1
40	1	G258 G259	1552316_a_at	IMAP1 Chr:7q36.1
41	73	G258 G259	217478_s_at	HLA-DMA Chr:6p21.3
42	104	G258 G259	230550_at	MS4A6A Chr:11q12.1
43	26	G258 G259	204006_s_at	FCGR3A Chr:1q23
44	24	G258 G259	203561_at	FCGR2A Chr:1q23
45	5	G258 G259	1552807_a_at	SIGLEC10 Chr:19q13.3
46	8	G257 G258 G259	1555728_a_at	MS4A4A Chr:11q12
47	17	G257 G258 G259	202901_x_at	CTSS Chr:1q21
48	18	G257 G258 G259	202902_s_at	CTSS Chr:1q21
49	23	G257 G258 G259	203416_at	CD53 Chr:1p13
50	20	G257 G258 G259	202957_at	HCLS1 Chr:3q13
51	64	G257 G258 G259	213566_at	RNASE6 Chr:14q11.2
52	28	G257 G258 G259	204122_at	TYROBP Chr:19q13.1
53	67	G257 G258 G259	214770_at	MSR1 Chr:8p22
54	13	G257 G258 G259	201743_at	CD14 Chr:5q31.1
55	7	G257 G258 G259	1555349_a_at	ITGB2 Chr:21q22.3
56	12	G257 G258 G259	201721_s_at	LAPTM5 Chr:1p34
57	6	G257 G258 G259	1554899_s_at	FCER1G Chr:1q23
58	72	G257 G258 G259	217388_s_at	KYNU Chr:2q22.3
59	43	G257 G258 G259	206584_at	LY96 Chr:8q13.3
60	10	G257 G258 G259	201422_at	IFI30 Chr:19p13.1
61	78	G257 G258 G259	219386_s_at	SLAMF8 Chr:1q23.1
62	14	G257 G258 G259	202546_at	VAMP8 Chr:2p12-p11.2
63	31	G257 G258 G259	204232_at	FCER1G Chr:1q23
64	45	G257 G258 G259	208018_s_at	HCK Chr:20q11-q12
65	15	G257 G258 G259	202803_s_at	ITGB2 Chr:21q22.3
66	35	G257 G258 G259	204787_at	Z39IG Chr:xq12-q13.3
67	19	G257 G258 G259	202953_at	C1QB Chr:1p36.3-p34.1
68	76	G257 G258 G259	218232_at	C1QA Chr:1p36.3-p34.1
69	90	G257 G258 G259	225353_s_at	C1QG Chr:1p36.11
70	60	G257 G258 G259	212588_at	PTPRC Chr:1q31-q32
71	106	G257 G258 G259	232617_at	CTSS Chr:1q21
72	99	G257 G258 G259	229560_at	TLR8 Chr:xp22
73	30	G257 G258 G259	204174_at	ALOX5AP Chr:13q12
74	32	G258 G259	204430_s_at	SLC2A5 Chr:1p36.2
75	75	G258 G259	217983_s_at	RNASET2 Chr:6q27
76	21	G258 G259	203104_at	CSF1R Chr:5q33-q35
77	83	G258 G259	220532_s_at	LR8 Chr:7q36.1
78	101	G258 G259	229937_x_at	LILRB1 Chr:19q13.4
79	41	G258 G259	206111_at	RNASE2 Chr:14q24-q31
80	38	G258 G259	204971_at	CSTA Chr:3q21
81	98	G258 G259	228532_at	MGC24133 Chr:1p13.2
82	52	G259	210314_x_at	TNFSF13 Chr:17p13.1
83	82	G259	220330_s_at	SAMSN1 Chr:21q11
84	87	G259	223343_at	MS4A7 Chr:11q12
85	96	G259	227266_s_at	FYB Chr:5p13.1
86	25		203645_s_at	CD163 Chr:12p13.3
87	68		215049_x_at	CD163 Chr:12p13.3
88	70		216233_at	CD163 Chr:12p13.3
89	77		218854_at	SART2 Chr:6q22
90	107		232843_s_at	DOCK8 Chr:9p24.3
91	91		225502_at	DOCK8 Chr:9p24.3
92	44		207655_s_at	BLNK Chr:10q23.2-q23.33
93	100		229723_at	TAGAP Chr:6q25.3
94	57		211742_s_at	EVI2B Chr:17q11.2
95	40		205997_at	ADAM28 Chr:8p21.2
96	88		223620_at	GPR34 Chr:xp11.4-p11.3
97	84		221210_s_at	NPL Chr:1q25
98	42		206420_at	IGSF6 Chr:16p12-p13
99	103		230391_at	--- ---
100	97		227346_at	ZNFN1A1 Chr:7p13-p11.1
101	81		220146_at	TLR7 Chr:xp22.3
102	85		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
103	39		205786_s_at	ITGAM Chr:16p11.2
104	33		204446_s_at	ALOX5 Chr:10q11.2
105	74		217767_at	C3 Chr:19p13.3-p13.2
106	94		226068_at	SYK Chr:9q22
107	102		230252_at	GPR92 Chr:12p13.31
108	105		230925_at	APBB1IP Chr:10p12.2

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:56:27

G15_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC