G15_using_S3

Super-paramagnetic Clustering of 108 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=41)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	50	209823_x_at	HLA-DQB1 Chr:6p21.3
2	42	206420_at	IGSF6 Chr:16p12-p13
3	52	210314_x_at	TNFSF13 Chr:17p13.1
4	40	205997_at	ADAM28 Chr:8p21.2
5	4	1552386_at	FLJ33641 Chr:5q12.1
6	38	204971_at	CSTA Chr:3q21
7	1	1552316_a_at	IMAP1 Chr:7q36.1
8	2	1552365_at	SCIN Chr:7p21.3
9	21	203104_at	CSF1R Chr:5q33-q35
10	22	203305_at	F13A1 Chr:6p25.3-p24.3
11	23	203416_at	CD53 Chr:1p13
12	34	204670_x_at	HLA-DRB3 Chr:6p21.3
13	41	206111_at	RNASE2 Chr:14q24-q31
14	44	207655_s_at	BLNK Chr:10q23.2-q23.33
15	5	1552807_a_at	SIGLEC10 Chr:19q13.3
16	6	1554899_s_at	FCER1G Chr:1q23
17	8	1555728_a_at	MS4A4A Chr:11q12
18	9	201137_s_at	HLA-DPB1 Chr:6p21.3
19	11	201487_at	CTSC Chr:11q14.1-q14.3
20	12	201721_s_at	LAPTM5 Chr:1p34
21	15	202803_s_at	ITGB2 Chr:21q22.3
22	24	203561_at	FCGR2A Chr:1q23
23	25	203645_s_at	CD163 Chr:12p13.3
24	26	204006_s_at	FCGR3A Chr:1q23
25	28	204122_at	TYROBP Chr:19q13.1
26	31	204232_at	FCER1G Chr:1q23
27	33	204446_s_at	ALOX5 Chr:10q11.2
28	35	204787_at	Z39IG Chr:xq12-q13.3
29	46	208306_x_at	HLA-DRB3 Chr:6p21.3
30	48	209312_x_at	HLA-DRB1 Chr:6p21.3
31	49	209619_at	CD74 Chr:5q32
32	51	210176_at	TLR1 Chr:4p14
33	53	210982_s_at	HLA-DRA Chr:6p21.3
34	59	211991_s_at	HLA-DPA1 Chr:6p21.3
35	7	1555349_a_at	ITGB2 Chr:21q22.3
36	66	214511_x_at	FCGR1A Chr:1q21.2-q21.3
37	67	214770_at	MSR1 Chr:8p22
38	68	215049_x_at	CD163 Chr:12p13.3
39	69	215193_x_at	HLA-DRB3 Chr:6p21.3
40	73	217478_s_at	HLA-DMA Chr:6p21.3
41	75	217983_s_at	RNASET2 Chr:6q27
42	81	220146_at	TLR7 Chr:xp22.3
43	87	223343_at	MS4A7 Chr:11q12
44	90	225353_s_at	C1QG Chr:1p36.11
45	91	225502_at	DOCK8 Chr:9p24.3
46	19	202953_at	C1QB Chr:1p36.3-p34.1
47	30	204174_at	ALOX5AP Chr:13q12
48	92	225646_at	CTSC Chr:11q14.1-q14.3
49	101	229937_x_at	LILRB1 Chr:19q13.4
50	94	226068_at	SYK Chr:9q22
51	96	227266_s_at	FYB Chr:5p13.1
52	98	228532_at	MGC24133 Chr:1p13.2
53	106	232617_at	CTSS Chr:1q21
54	61	212671_s_at	HLA-DQA1 Chr:6p21.3
55	64	213566_at	RNASE6 Chr:14q11.2
56	3	1552367_a_at	SCIN Chr:7p21.3
57	10	201422_at	IFI30 Chr:19p13.1
58	14	202546_at	VAMP8 Chr:2p12-p11.2
59	16	202833_s_at	SERPINA1 Chr:14q32.1
60	17	202901_x_at	CTSS Chr:1q21
61	18	202902_s_at	CTSS Chr:1q21
62	20	202957_at	HCLS1 Chr:3q13
63	27	204007_at	FCGR3A Chr:1q23
64	29	204150_at	STAB1 Chr:3p21.31
65	32	204430_s_at	SLC2A5 Chr:1p36.2
66	36	204834_at	FGL2 Chr:7q11.23
67	37	204959_at	MNDA Chr:1q22
68	39	205786_s_at	ITGAM Chr:16p11.2
69	43	206584_at	LY96 Chr:8q13.3
70	45	208018_s_at	HCK Chr:20q11-q12
71	47	208894_at	HLA-DRA Chr:6p21.3
72	54	211429_s_at	--- ---
73	60	212588_at	PTPRC Chr:1q31-q32
74	70	216233_at	CD163 Chr:12p13.3
75	71	216950_s_at	FCGR1A Chr:1q21.2-q21.3
76	74	217767_at	C3 Chr:19p13.3-p13.2
77	76	218232_at	C1QA Chr:1p36.3-p34.1
78	13	201743_at	CD14 Chr:5q31.1
79	79	219607_s_at	MS4A4A Chr:11q12
80	83	220532_s_at	LR8 Chr:7q36.1
81	72	217388_s_at	KYNU Chr:2q22.3
82	84	221210_s_at	NPL Chr:1q25
83	86	223280_x_at	MS4A6A Chr:11q12.1
84	89	224356_x_at	MS4A6A Chr:11q12.1
85	93	225647_s_at	CTSC Chr:11q14.1-q14.3
86	95	227265_at	--- ---
87	97	227346_at	ZNFN1A1 Chr:7p13-p11.1
88	102	230252_at	GPR92 Chr:12p13.31
89	103	230391_at	--- ---
90	104	230550_at	MS4A6A Chr:11q12.1
91	105	230925_at	APBB1IP Chr:10p12.2
92	77	218854_at	SART2 Chr:6q22
93	108	38487_at	STAB1 Chr:3p21.31
94	80	219666_at	MS4A6A Chr:11q12.1
95	99	229560_at	TLR8 Chr:xp22
96	65	214467_at	GPR65 Chr:14q31-q32.1
97	82	220330_s_at	SAMSN1 Chr:21q11
98	107	232843_s_at	DOCK8 Chr:9p24.3
99	57	211742_s_at	EVI2B Chr:17q11.2
100	78	219386_s_at	SLAMF8 Chr:1q23.1
101	85	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
102	58	211990_at	HLA-DPA1 Chr:6p21.3
103	55	211654_x_at	HLA-DQB1 Chr:6p21.3
104	100	229723_at	TAGAP Chr:6q25.3
105	88	223620_at	GPR34 Chr:xp11.4-p11.3
106	63	213537_at	HLA-DPA1 Chr:6p21.3
107	62	212998_x_at	HLA-DQB1 Chr:6p21.3
108	56	211656_x_at	HLA-DQB1 Chr:6p21.3

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	41
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:53:38

G15_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=41)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC