G15_using_S2

Super-paramagnetic Clustering of 108 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=36)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	22	203305_at	F13A1 Chr:6p25.3-p24.3
2	10	201422_at	IFI30 Chr:19p13.1
3	30	204174_at	ALOX5AP Chr:13q12
4	38	204971_at	CSTA Chr:3q21
5	40	205997_at	ADAM28 Chr:8p21.2
6	11	201487_at	CTSC Chr:11q14.1-q14.3
7	52	210314_x_at	TNFSF13 Chr:17p13.1
8	51	210176_at	TLR1 Chr:4p14
9	1	1552316_a_at	IMAP1 Chr:7q36.1
10	3	1552367_a_at	SCIN Chr:7p21.3
11	42	206420_at	IGSF6 Chr:16p12-p13
12	4	1552386_at	FLJ33641 Chr:5q12.1
13	8	1555728_a_at	MS4A4A Chr:11q12
14	13	201743_at	CD14 Chr:5q31.1
15	16	202833_s_at	SERPINA1 Chr:14q32.1
16	17	202901_x_at	CTSS Chr:1q21
17	23	203416_at	CD53 Chr:1p13
18	24	203561_at	FCGR2A Chr:1q23
19	26	204006_s_at	FCGR3A Chr:1q23
20	5	1552807_a_at	SIGLEC10 Chr:19q13.3
21	27	204007_at	FCGR3A Chr:1q23
22	28	204122_at	TYROBP Chr:19q13.1
23	34	204670_x_at	HLA-DRB3 Chr:6p21.3
24	35	204787_at	Z39IG Chr:xq12-q13.3
25	36	204834_at	FGL2 Chr:7q11.23
26	44	207655_s_at	BLNK Chr:10q23.2-q23.33
27	12	201721_s_at	LAPTM5 Chr:1p34
28	39	205786_s_at	ITGAM Chr:16p11.2
29	29	204150_at	STAB1 Chr:3p21.31
30	41	206111_at	RNASE2 Chr:14q24-q31
31	76	218232_at	C1QA Chr:1p36.3-p34.1
32	47	208894_at	HLA-DRA Chr:6p21.3
33	48	209312_x_at	HLA-DRB1 Chr:6p21.3
34	58	211990_at	HLA-DPA1 Chr:6p21.3
35	32	204430_s_at	SLC2A5 Chr:1p36.2
36	60	212588_at	PTPRC Chr:1q31-q32
37	63	213537_at	HLA-DPA1 Chr:6p21.3
38	46	208306_x_at	HLA-DRB3 Chr:6p21.3
39	69	215193_x_at	HLA-DRB3 Chr:6p21.3
40	96	227266_s_at	FYB Chr:5p13.1
41	18	202902_s_at	CTSS Chr:1q21
42	20	202957_at	HCLS1 Chr:3q13
43	6	1554899_s_at	FCER1G Chr:1q23
44	31	204232_at	FCER1G Chr:1q23
45	77	218854_at	SART2 Chr:6q22
46	49	209619_at	CD74 Chr:5q32
47	37	204959_at	MNDA Chr:1q22
48	64	213566_at	RNASE6 Chr:14q11.2
49	86	223280_x_at	MS4A6A Chr:11q12.1
50	87	223343_at	MS4A7 Chr:11q12
51	45	208018_s_at	HCK Chr:20q11-q12
52	88	223620_at	GPR34 Chr:xp11.4-p11.3
53	50	209823_x_at	HLA-DQB1 Chr:6p21.3
54	53	210982_s_at	HLA-DRA Chr:6p21.3
55	59	211991_s_at	HLA-DPA1 Chr:6p21.3
56	54	211429_s_at	--- ---
57	65	214467_at	GPR65 Chr:14q31-q32.1
58	72	217388_s_at	KYNU Chr:2q22.3
59	73	217478_s_at	HLA-DMA Chr:6p21.3
60	15	202803_s_at	ITGB2 Chr:21q22.3
61	75	217983_s_at	RNASET2 Chr:6q27
62	79	219607_s_at	MS4A4A Chr:11q12
63	2	1552365_at	SCIN Chr:7p21.3
64	81	220146_at	TLR7 Chr:xp22.3
65	7	1555349_a_at	ITGB2 Chr:21q22.3
66	82	220330_s_at	SAMSN1 Chr:21q11
67	84	221210_s_at	NPL Chr:1q25
68	85	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
69	90	225353_s_at	C1QG Chr:1p36.11
70	21	203104_at	CSF1R Chr:5q33-q35
71	57	211742_s_at	EVI2B Chr:17q11.2
72	74	217767_at	C3 Chr:19p13.3-p13.2
73	91	225502_at	DOCK8 Chr:9p24.3
74	98	228532_at	MGC24133 Chr:1p13.2
75	102	230252_at	GPR92 Chr:12p13.31
76	14	202546_at	VAMP8 Chr:2p12-p11.2
77	93	225647_s_at	CTSC Chr:11q14.1-q14.3
78	94	226068_at	SYK Chr:9q22
79	9	201137_s_at	HLA-DPB1 Chr:6p21.3
80	95	227265_at	--- ---
81	19	202953_at	C1QB Chr:1p36.3-p34.1
82	33	204446_s_at	ALOX5 Chr:10q11.2
83	97	227346_at	ZNFN1A1 Chr:7p13-p11.1
84	107	232843_s_at	DOCK8 Chr:9p24.3
85	99	229560_at	TLR8 Chr:xp22
86	100	229723_at	TAGAP Chr:6q25.3
87	89	224356_x_at	MS4A6A Chr:11q12.1
88	101	229937_x_at	LILRB1 Chr:19q13.4
89	103	230391_at	--- ---
90	104	230550_at	MS4A6A Chr:11q12.1
91	105	230925_at	APBB1IP Chr:10p12.2
92	106	232617_at	CTSS Chr:1q21
93	66	214511_x_at	FCGR1A Chr:1q21.2-q21.3
94	71	216950_s_at	FCGR1A Chr:1q21.2-q21.3
95	61	212671_s_at	HLA-DQA1 Chr:6p21.3
96	67	214770_at	MSR1 Chr:8p22
97	43	206584_at	LY96 Chr:8q13.3
98	92	225646_at	CTSC Chr:11q14.1-q14.3
99	70	216233_at	CD163 Chr:12p13.3
100	83	220532_s_at	LR8 Chr:7q36.1
101	56	211656_x_at	HLA-DQB1 Chr:6p21.3
102	80	219666_at	MS4A6A Chr:11q12.1
103	62	212998_x_at	HLA-DQB1 Chr:6p21.3
104	55	211654_x_at	HLA-DQB1 Chr:6p21.3
105	78	219386_s_at	SLAMF8 Chr:1q23.1
106	25	203645_s_at	CD163 Chr:12p13.3
107	68	215049_x_at	CD163 Chr:12p13.3
108	108	38487_at	STAB1 Chr:3p21.31

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	36
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:52:21

G15_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=36)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC