G15_using_S1

Super-paramagnetic Clustering of 108 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	92		225646_at	CTSC Chr:11q14.1-q14.3
2	11		201487_at	CTSC Chr:11q14.1-q14.3
3	93		225647_s_at	CTSC Chr:11q14.1-q14.3
4	3		1552367_a_at	SCIN Chr:7p21.3
5	2		1552365_at	SCIN Chr:7p21.3
6	36		204834_at	FGL2 Chr:7q11.23
7	4		1552386_at	FLJ33641 Chr:5q12.1
8	95		227265_at	--- ---
9	82		220330_s_at	SAMSN1 Chr:21q11
10	96		227266_s_at	FYB Chr:5p13.1
11	87		223343_at	MS4A7 Chr:11q12
12	84		221210_s_at	NPL Chr:1q25
13	54		211429_s_at	--- ---
14	16		202833_s_at	SERPINA1 Chr:14q32.1
15	107		232843_s_at	DOCK8 Chr:9p24.3
16	91		225502_at	DOCK8 Chr:9p24.3
17	44		207655_s_at	BLNK Chr:10q23.2-q23.33
18	47		208894_at	HLA-DRA Chr:6p21.3
19	53		210982_s_at	HLA-DRA Chr:6p21.3
20	46		208306_x_at	HLA-DRB3 Chr:6p21.3
21	48		209312_x_at	HLA-DRB1 Chr:6p21.3
22	69		215193_x_at	HLA-DRB3 Chr:6p21.3
23	61		212671_s_at	HLA-DQA1 Chr:6p21.3
24	34		204670_x_at	HLA-DRB3 Chr:6p21.3
25	59		211991_s_at	HLA-DPA1 Chr:6p21.3
26	49		209619_at	CD74 Chr:5q32
27	73		217478_s_at	HLA-DMA Chr:6p21.3
28	40		205997_at	ADAM28 Chr:8p21.2
29	88		223620_at	GPR34 Chr:xp11.4-p11.3
30	100		229723_at	TAGAP Chr:6q25.3
31	57		211742_s_at	EVI2B Chr:17q11.2
32	8		1555728_a_at	MS4A4A Chr:11q12
33	79		219607_s_at	MS4A4A Chr:11q12
34	43		206584_at	LY96 Chr:8q13.3
35	86		223280_x_at	MS4A6A Chr:11q12.1
36	89		224356_x_at	MS4A6A Chr:11q12.1
37	80		219666_at	MS4A6A Chr:11q12.1
38	1		1552316_a_at	IMAP1 Chr:7q36.1
39	104		230550_at	MS4A6A Chr:11q12.1
40	37		204959_at	MNDA Chr:1q22
41	27		204007_at	FCGR3A Chr:1q23
42	51		210176_at	TLR1 Chr:4p14
43	26		204006_s_at	FCGR3A Chr:1q23
44	65		214467_at	GPR65 Chr:14q31-q32.1
45	19	G256	202953_at	C1QB Chr:1p36.3-p34.1
46	90	G256	225353_s_at	C1QG Chr:1p36.11
47	76	G256	218232_at	C1QA Chr:1p36.3-p34.1
48	41	G256	206111_at	RNASE2 Chr:14q24-q31
49	6	G256	1554899_s_at	FCER1G Chr:1q23
50	83	G256	220532_s_at	LR8 Chr:7q36.1
51	30	G256	204174_at	ALOX5AP Chr:13q12
52	7	G256	1555349_a_at	ITGB2 Chr:21q22.3
53	15	G256	202803_s_at	ITGB2 Chr:21q22.3
54	74	G256	217767_at	C3 Chr:19p13.3-p13.2
55	32	G256	204430_s_at	SLC2A5 Chr:1p36.2
56	23	G256	203416_at	CD53 Chr:1p13
57	75	G256	217983_s_at	RNASET2 Chr:6q27
58	60	G256	212588_at	PTPRC Chr:1q31-q32
59	5	G256	1552807_a_at	SIGLEC10 Chr:19q13.3
60	20	G256	202957_at	HCLS1 Chr:3q13
61	12	G256	201721_s_at	LAPTM5 Chr:1p34
62	99	G256	229560_at	TLR8 Chr:xp22
63	28	G256	204122_at	TYROBP Chr:19q13.1
64	21	G256	203104_at	CSF1R Chr:5q33-q35
65	33	G256	204446_s_at	ALOX5 Chr:10q11.2
66	39	G256	205786_s_at	ITGAM Chr:16p11.2
67	85	G256	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
68	94	G256	226068_at	SYK Chr:9q22
69	31	G256	204232_at	FCER1G Chr:1q23
70	10	G256	201422_at	IFI30 Chr:19p13.1
71	78	G256	219386_s_at	SLAMF8 Chr:1q23.1
72	14	G256	202546_at	VAMP8 Chr:2p12-p11.2
73	67	G256	214770_at	MSR1 Chr:8p22
74	72	G256	217388_s_at	KYNU Chr:2q22.3
75	45	G256	208018_s_at	HCK Chr:20q11-q12
76	101	G256	229937_x_at	LILRB1 Chr:19q13.4
77	13	G256	201743_at	CD14 Chr:5q31.1
78	35	G256	204787_at	Z39IG Chr:xq12-q13.3
79	71		216950_s_at	FCGR1A Chr:1q21.2-q21.3
80	66		214511_x_at	FCGR1A Chr:1q21.2-q21.3
81	42		206420_at	IGSF6 Chr:16p12-p13
82	103		230391_at	--- ---
83	97		227346_at	ZNFN1A1 Chr:7p13-p11.1
84	81		220146_at	TLR7 Chr:xp22.3
85	77		218854_at	SART2 Chr:6q22
86	24		203561_at	FCGR2A Chr:1q23
87	64		213566_at	RNASE6 Chr:14q11.2
88	98		228532_at	MGC24133 Chr:1p13.2
89	17		202901_x_at	CTSS Chr:1q21
90	18		202902_s_at	CTSS Chr:1q21
91	52		210314_x_at	TNFSF13 Chr:17p13.1
92	106		232617_at	CTSS Chr:1q21
93	38		204971_at	CSTA Chr:3q21
94	25		203645_s_at	CD163 Chr:12p13.3
95	68		215049_x_at	CD163 Chr:12p13.3
96	70		216233_at	CD163 Chr:12p13.3
97	63		213537_at	HLA-DPA1 Chr:6p21.3
98	58		211990_at	HLA-DPA1 Chr:6p21.3
99	102		230252_at	GPR92 Chr:12p13.31
100	105		230925_at	APBB1IP Chr:10p12.2
101	9		201137_s_at	HLA-DPB1 Chr:6p21.3
102	29		204150_at	STAB1 Chr:3p21.31
103	108		38487_at	STAB1 Chr:3p21.31
104	22		203305_at	F13A1 Chr:6p25.3-p24.3
105	50		209823_x_at	HLA-DQB1 Chr:6p21.3
106	56		211656_x_at	HLA-DQB1 Chr:6p21.3
107	55		211654_x_at	HLA-DQB1 Chr:6p21.3
108	62		212998_x_at	HLA-DQB1 Chr:6p21.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:50:48

G15_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC