G14_using_S6

Super-paramagnetic Clustering of 26 points in a 74 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=7)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    115 220065_atTNMD Chr:xq21.33-q23
    27 205713_s_atCOMP Chr:19p13.1
    32 203434_s_atMME Chr:3q25.1-q25.2
    410 213456_atSOSTDC1 Chr:7p21.2
    525 239468_atC10orf48 Chr:10p12.1
    68 205848_atGAS2 Chr:11p14.3-p15.2
    74 205430_atBMP5 Chr:6p12.1
    85 205431_s_atBMP5 Chr:6p12.1
    93 204776_atTHBS4 Chr:5q13
    1024 236035_at--- ---
    116 205619_s_atMEOX1 Chr:17q21
    1212 218499_atMST4 Chr:xq26.2
    1317 226930_atFNDC1 Chr:6q25
    141 203180_atALDH1A3 Chr:15q26.3
    1516 226834_atASAM Chr:11q24.1
    1618 227070_atLOC83468 Chr:12q
    1719 227850_x_atCDC42EP5 Chr:19q13.42
    1820 229839_atMGC45780 Chr:8p21.1
    1913 219837_s_atC17 Chr:4p16-p15
    2021 231766_s_atCOL12A1 Chr:6q12-q13
    2111 217525_atUNQ564 Chr:11p15.4
    2222 232090_at--- ---
    239 212414_s_at38236 Chr:xq25
    2426 244885_atEBF2 Chr:8p21.2
    2514 220014_atLOC51334 Chr:5q23.2
    2623 235944_atFIBL-6 Chr:1q25.3

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156570.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217194bis.cel
    226990.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306680.cel
    3140300.cel
    327093.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5774ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626783.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687297.cel
    6941323.cel
    706465R.cel
    716884.cel
    7273ge197.cel
    7356528bis.cel
    746363.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)7
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:48:32