G14_using_S4

Super-paramagnetic Clustering of 26 points in a 69 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=5)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    125 239468_atC10orf48 Chr:10p12.1
    22 203434_s_atMME Chr:3q25.1-q25.2
    310 213456_atSOSTDC1 Chr:7p21.2
    43 204776_atTHBS4 Chr:5q13
    515 220065_atTNMD Chr:xq21.33-q23
    67 205713_s_atCOMP Chr:19p13.1
    721 231766_s_atCOL12A1 Chr:6q12-q13
    816 226834_atASAM Chr:11q24.1
    913 219837_s_atC17 Chr:4p16-p15
    1024 236035_at--- ---
    115 205431_s_atBMP5 Chr:6p12.1
    124 205430_atBMP5 Chr:6p12.1
    136 205619_s_atMEOX1 Chr:17q21
    1412 218499_atMST4 Chr:xq26.2
    1517 226930_atFNDC1 Chr:6q25
    168 205848_atGAS2 Chr:11p14.3-p15.2
    171 203180_atALDH1A3 Chr:15q26.3
    1819 227850_x_atCDC42EP5 Chr:19q13.42
    199 212414_s_at38236 Chr:xq25
    2011 217525_atUNQ564 Chr:11p15.4
    2122 232090_at--- ---
    2218 227070_atLOC83468 Chr:12q
    2320 229839_atMGC45780 Chr:8p21.1
    2423 235944_atFIBL-6 Chr:1q25.3
    2514 220014_atLOC51334 Chr:5q23.2
    2626 244885_atEBF2 Chr:8p21.2

    Samples Names

    12104.cel
    281317.cel
    3412.cel
    43106.cel
    5111430.cel
    653547.cel
    758574.cel
    86129.cel
    930269.cel
    10101399.cel
    116070.cel
    12151497R.cel
    1331274.cel
    1418157.cel
    1542356bis.cel
    16221854R.cel
    176694bis.cel
    186490.cel
    19121437.cel
    2071308.cel
    2123190.cel
    2232283.cel
    231100R.cel
    2440345.cel
    251615.cel
    266180.cel
    2736300.cel
    286593.cel
    2928246.cel
    3029254.cel
    3126236.cel
    3234288.cel
    3346428.cel
    3417155R.cel
    3543360.cel
    3656566.cel
    37131453.cel
    38201621.cel
    3933284.cel
    4038328.cel
    4191360.cel
    4241349.cel
    43211622R.cel
    4424218.cel
    4547444.cel
    4627242.cel
    4744390.cel
    4850506.cel
    4951527.cel
    5055563.cel
    5119159.cel
    523530.cel
    5369ge205.cel
    5448458.cel
    5554558.cel
    5639344.cel
    5749461.cel
    586283.cel
    5914147.cel
    6025222.cel
    6151284.cel
    6245396.cel
    635757.cel
    646797.cel
    6537323.cel
    665965R.cel
    676384.cel
    6868ge197.cel
    6952528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)5
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:46:33