G14_using_S2

Super-paramagnetic Clustering of 26 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=2)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	14		220014_at		LOC51334 Chr:5q23.2
2	11		217525_at		UNQ564 Chr:11p15.4
3	7		205713_s_at		COMP Chr:19p13.1
4	21		231766_s_at		COL12A1 Chr:6q12-q13
5	1		203180_at		ALDH1A3 Chr:15q26.3
6	17		226930_at		FNDC1 Chr:6q25
7	20		229839_at		MGC45780 Chr:8p21.1
8	12		218499_at		MST4 Chr:xq26.2
9	15		220065_at		TNMD Chr:xq21.33-q23
10	24		236035_at		--- ---
11	23		235944_at		FIBL-6 Chr:1q25.3
12	8		205848_at		GAS2 Chr:11p14.3-p15.2
13	5		205431_s_at		BMP5 Chr:6p12.1
14	19		227850_x_at		CDC42EP5 Chr:19q13.42
15	6		205619_s_at		MEOX1 Chr:17q21
16	4		205430_at		BMP5 Chr:6p12.1
17	2		203434_s_at		MME Chr:3q25.1-q25.2
18	9		212414_s_at		38236 Chr:xq25
19	25		239468_at		C10orf48 Chr:10p12.1
20	22		232090_at		--- ---
21	13		219837_s_at		C17 Chr:4p16-p15
22	18		227070_at		LOC83468 Chr:12q
23	16		226834_at		ASAM Chr:11q24.1
24	3		204776_at		THBS4 Chr:5q13
25	10		213456_at		SOSTDC1 Chr:7p21.2
26	26		244885_at		EBF2 Chr:8p21.2

Samples Names

1	1			1357.cel
2	2			1795R.cel
3	3			1869RR.cel
4	4			55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	2
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:44:36