G13_using_S6

Super-paramagnetic Clustering of 39 points in a 74 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=13)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	4		201131_s_at		CDH1 Chr:16q22.1
2	1		1555385_at		GALGT Chr:12q13.3
3	13		206435_at		GALGT Chr:12q13.3
4	19		214951_at		SLC26A10 Chr:12q13
5	10		205539_at		AVIL Chr:12q13.2
6	2		1568706_s_at		--- ---
7	36		238999_at		--- ---
8	18		214332_s_at		TSFM Chr:12q13-q14
9	17		214331_at		TSFM Chr:12q13-q14
10	15		212656_at		TSFM Chr:12q13-q14
11	16		213861_s_at		DKFZP586D0919 Chr:12q13.2
12	28		227678_at		KUB3 Chr:12q13.2
13	27		226546_at		--- ---
14	34		235721_at		DTX3 Chr:12q13.2
15	7		203227_s_at		SAS Chr:12q13.3
16	8		204027_s_at		METTL1 Chr:12q13
17	5		202246_s_at		CDK4 Chr:12q14
18	11		205676_at		CYP27B1 Chr:12q13.1-q13.3
19	26		226454_at		LOC92979 Chr:12q13.2
20	31		230001_at		LOC92979 Chr:12q13.2
21	30		229917_at		--- ---
22	6		203226_s_at		SAS Chr:12q13.3
23	3		200714_x_at		OS-9 Chr:12q13
24	20		215399_s_at		OS-9 Chr:12q13
25	9		205386_s_at		MDM2 Chr:12q14.3-q15
26	22		217542_at		MGC5370 Chr:12q14.3
27	14		211832_s_at		MDM2 Chr:12q14.3-q15
28	21		217373_x_at		MDM2 Chr:12q14.3-q15
29	25		225160_x_at		MGC5370 Chr:12q14.3
30	29		229711_s_at		MGC5370 Chr:12q14.3
31	35		238733_at		--- ---
32	23		218768_at		NUP107 Chr:12q14.3
33	38		244675_at		RGS8 Chr:1q25
34	24		224489_at		LOC284058 Chr:17q21.32
35	39		AFFX-M27830_5_at		--- ---
36	12		206100_at		CPM Chr:12q14.3
37	32		235019_at		CPM Chr:12q14.3
38	33		235706_at		CPM Chr:12q14.3
39	37		241765_at		CPM Chr:12q14.3

Samples Names

1	16			148.cel
2	19			1553.cel
3	4			1076.cel
4	25			1780.cel
5	2			104.cel
6	9			1317.cel
7	5			12.cel
8	3			106.cel
9	12			1430.cel
10	57			547.cel
11	62			574.cel
12	7			129.cel
13	34			269.cel
14	11			1399.cel
15	65			70.cel
16	17			1497R.cel
17	35			274.cel
18	21			157.cel
19	46			356bis.cel
20	26			1854R.cel
21	71			94bis.cel
22	69			90.cel
23	13			1437.cel
24	8			1308.cel
25	27			190.cel
26	36			283.cel
27	1			100R.cel
28	44			345.cel
29	18			15.cel
30	66			80.cel
31	40			300.cel
32	70			93.cel
33	32			246.cel
34	33			254.cel
35	30			236.cel
36	38			288.cel
37	50			428.cel
38	20			155R.cel
39	47			360.cel
40	60			566.cel
41	14			1453.cel
42	23			1621.cel
43	37			284.cel
44	42			328.cel
45	10			1360.cel
46	45			349.cel
47	24			1622R.cel
48	28			218.cel
49	51			444.cel
50	31			242.cel
51	48			390.cel
52	54			506.cel
53	55			527.cel
54	59			563.cel
55	22			159.cel
56	39			30.cel
57	74			ge205.cel
58	52			458.cel
59	58			558.cel
60	43			344.cel
61	53			461.cel
62	67			83.cel
63	15			147.cel
64	29			222.cel
65	6			1284.cel
66	49			396.cel
67	61			57.cel
68	72			97.cel
69	41			323.cel
70	64			65R.cel
71	68			84.cel
72	73			ge197.cel
73	56			528bis.cel
74	63			63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	13
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:42:44