G13_using_S1

Super-paramagnetic Clustering of 39 points in a 84 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=11)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	4		201131_s_at		CDH1 Chr:16q22.1
2	1		1555385_at		GALGT Chr:12q13.3
3	5		202246_s_at		CDK4 Chr:12q14
4	7		203227_s_at		SAS Chr:12q13.3
5	8		204027_s_at		METTL1 Chr:12q13
6	11		205676_at		CYP27B1 Chr:12q13.1-q13.3
7	26		226454_at		LOC92979 Chr:12q13.2
8	31		230001_at		LOC92979 Chr:12q13.2
9	30		229917_at		--- ---
10	15		212656_at		TSFM Chr:12q13-q14
11	16		213861_s_at		DKFZP586D0919 Chr:12q13.2
12	17		214331_at		TSFM Chr:12q13-q14
13	18		214332_s_at		TSFM Chr:12q13-q14
14	3		200714_x_at		OS-9 Chr:12q13
15	20		215399_s_at		OS-9 Chr:12q13
16	28		227678_at		KUB3 Chr:12q13.2
17	34		235721_at		DTX3 Chr:12q13.2
18	6		203226_s_at		SAS Chr:12q13.3
19	9		205386_s_at		MDM2 Chr:12q14.3-q15
20	14		211832_s_at		MDM2 Chr:12q14.3-q15
21	21		217373_x_at		MDM2 Chr:12q14.3-q15
22	22		217542_at		MGC5370 Chr:12q14.3
23	25		225160_x_at		MGC5370 Chr:12q14.3
24	35		238733_at		--- ---
25	29		229711_s_at		MGC5370 Chr:12q14.3
26	2		1568706_s_at		--- ---
27	10		205539_at		AVIL Chr:12q13.2
28	27		226546_at		--- ---
29	36		238999_at		--- ---
30	23		218768_at		NUP107 Chr:12q14.3
31	38		244675_at		RGS8 Chr:1q25
32	13		206435_at		GALGT Chr:12q13.3
33	19		214951_at		SLC26A10 Chr:12q13
34	24		224489_at		LOC284058 Chr:17q21.32
35	39		AFFX-M27830_5_at		--- ---
36	12		206100_at		CPM Chr:12q14.3
37	32		235019_at		CPM Chr:12q14.3
38	33		235706_at		CPM Chr:12q14.3
39	37		241765_at		CPM Chr:12q14.3

Samples Names

1	25			161.cel
2	33			211.cel
3	11			1357.cel
4	29			1795R.cel
5	31			1869RR.cel
6	66			55.cel
7	18			148.cel
8	21			1553.cel
9	4			1076.cel
10	28			1780.cel
11	2			104.cel
12	10			1317.cel
13	5			12.cel
14	3			106.cel
15	14			1430.cel
16	65			547.cel
17	71			574.cel
18	7			129.cel
19	41			269.cel
20	13			1399.cel
21	75			70.cel
22	19			1497R.cel
23	42			274.cel
24	23			157.cel
25	53			356bis.cel
26	30			1854R.cel
27	81			94bis.cel
28	79			90.cel
29	15			1437.cel
30	9			1308.cel
31	32			190.cel
32	43			283.cel
33	1			100R.cel
34	51			345.cel
35	20			15.cel
36	76			80.cel
37	47			300.cel
38	80			93.cel
39	39			246.cel
40	40			254.cel
41	37			236.cel
42	45			288.cel
43	57			428.cel
44	22			155R.cel
45	54			360.cel
46	69			566.cel
47	16			1453.cel
48	26			1621.cel
49	44			284.cel
50	49			328.cel
51	12			1360.cel
52	52			349.cel
53	27			1622R.cel
54	35			218.cel
55	58			444.cel
56	38			242.cel
57	55			390.cel
58	61			506.cel
59	62			527.cel
60	68			563.cel
61	24			159.cel
62	46			30.cel
63	84			ge205.cel
64	59			458.cel
65	67			558.cel
66	50			344.cel
67	60			461.cel
68	77			83.cel
69	17			147.cel
70	36			222.cel
71	6			1284.cel
72	56			396.cel
73	70			57.cel
74	82			97.cel
75	48			323.cel
76	74			65R.cel
77	78			84.cel
78	83			ge197.cel
79	63			528bis.cel
80	73			63.cel
81	8			1297.cel
82	64			534.cel
83	34			212R.cel
84	72			57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:35:50