G12_using_S5

Super-paramagnetic Clustering of 80 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	30		206133_at	HSXIAPAF1 Chr:17p13.2
2	65		228617_at	HSXIAPAF1 Chr:17p13.2
3	13		202863_at	SP100 Chr:2q37.1
4	14		202864_s_at	SP100 Chr:2q37.1
5	20		204205_at	APOBEC3G Chr:22q13.1-q13.2
6	4		200904_at	HLA-E Chr:6p21.3
7	19		204070_at	RARRES3 Chr:11q23
8	71	G247 G248 G249	235157_at	--- ---
9	46	G247 G248 G249	218943_s_at	DDX58 Chr:9p12
10	49	G247 G248 G249	219211_at	USP18 Chr:22q11.21
11	40	G247 G248 G249	213797_at	cig5 Chr:2p25.2
12	59	G247 G248 G249	226702_at	LOC129607 Chr:2p25.2
13	6	G247 G248 G249	202086_at	MX1 Chr:21q22.3
14	50	G247 G248 G249	219352_at	FLJ20637 Chr:4q22.1
15	76	G247 G248 G249	242625_at	cig5 Chr:2p25.2
16	17	G247 G248 G249	203153_at	IFIT1 Chr:10q25-q26
17	41	G247 G248 G249	214059_at	IFI44 Chr:1p31.1
18	10	G247 G248 G249	202411_at	IFI27 Chr:14q32
19	22	G247 G248 G249	204415_at	G1P3 Chr:1p35
20	26	G247 G248 G249	205483_s_at	G1P2 Chr:1p36.33
21	23	G247 G248 G249	204439_at	C1orf29 Chr:1p31.1
22	5	G247 G248 G249	201641_at	BST2 Chr:19p13.2
23	42	G247 G248 G249	214453_s_at	IFI44 Chr:1p31.1
24	24	G248 G249	204972_at	OAS2 Chr:12q24.2
25	25	G248 G249	204994_at	MX2 Chr:21q22.3
26	15	G248 G249	202869_at	OAS1 Chr:12q24.1
27	27	G248 G249	205552_s_at	OAS1 Chr:12q24.1
28	64	G248 G249	228607_at	OAS2 Chr:12q24.2
29	44	G248 G249	218400_at	OAS3 Chr:12q24.2
30	72	G248 G249	235276_at	EPSTI1 Chr:13q13.3
31	62	G248 G249	228152_s_at	FLJ31033 Chr:4q32.3
32	51	G248 G249	219684_at	IFRG28 Chr:3q28
33	47	G249	218986_s_at	FLJ20035 Chr:4q32.3
34	48	G249	219209_at	MDA5 Chr:2p24.3-q24.3
35	45	G249	218543_s_at	ZC3HDC1 Chr:7q34
36	52	G249	219863_at	CEB1 Chr:4q22.1-q23
37	70		232375_at	--- ---
38	35		209969_s_at	STAT1 Chr:2q32.2
39	57		226474_at	NOD27 Chr:16q13
40	38		211911_x_at	HLA-C Chr:6p21.3
41	31		208729_x_at	HLA-B Chr:6p21.3
42	8		202270_at	GBP1 Chr:1p22.2
43	7		202269_x_at	GBP1 Chr:1p22.2
44	68		231577_s_at	GBP1 Chr:1p22.2
45	11		202430_s_at	PLSCR1 Chr:3q23
46	12		202446_s_at	PLSCR1 Chr:3q23
47	39		213293_s_at	TRIM22 Chr:11p15
48	75		241916_at	PLSCR1 Chr:3q23
49	43		217933_s_at	LAP3 Chr:4p15.33
50	21		204279_at	PSMB9 Chr:6p21.3
51	29		206082_at	HCP5 Chr:6p21.3
52	18		203964_at	NMI Chr:2p24.3-q21.3
53	33		209417_s_at	IFI35 Chr:17q21
54	9		202307_s_at	TAP1 Chr:6p21.3
55	36		210705_s_at	TRIM5 Chr:11p15
56	16		203148_s_at	TRIM14 Chr:9q31.1
57	53		223220_s_at	BAL Chr:3q13-q21
58	56		225415_at	BBAP Chr:3q21.1
59	32		209040_s_at	PSMB8 Chr:6p21.3
60	34		209846_s_at	BTN3A2 Chr:6p22.1
61	54		223434_at	GBP3 Chr:1p22.2
62	58		226603_at	FLJ39885 Chr:7q21.3
63	63		228531_at	FLJ20073 Chr:7q21.3
64	67		230036_at	FLJ39885 Chr:7q21.3
65	73		235643_at	FLJ39885 Chr:7q21.3
66	77		243271_at	--- ---
67	80		AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
68	79		AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
69	3		200887_s_at	STAT1 Chr:2q32.2
70	60		226757_at	IFIT2 Chr:10q23-q25
71	66		229450_at	IFIT4 Chr:10q24
72	78		38241_at	BTN3A3 Chr:6p21.3
73	69		232024_at	HIMAP2 Chr:7q36.1
74	74		239587_at	--- ---
75	1		1552701_a_at	COP Chr:11q22
76	2		1552703_s_at	CASP1 Chr:11q23
77	55		225171_at	ARHGAP18 Chr:6q23.1
78	28		206011_at	CASP1 Chr:11q23
79	37		211368_s_at	CASP1 Chr:11q23
80	61		227458_at	PDCD1LG1 Chr:9p24

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:32:35

G12_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC