G12_using_S4

Super-paramagnetic Clustering of 80 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13		202863_at	SP100 Chr:2q37.1
2	14		202864_s_at	SP100 Chr:2q37.1
3	20		204205_at	APOBEC3G Chr:22q13.1-q13.2
4	4		200904_at	HLA-E Chr:6p21.3
5	19		204070_at	RARRES3 Chr:11q23
6	38	G246	211911_x_at	HLA-C Chr:6p21.3
7	31	G246	208729_x_at	HLA-B Chr:6p21.3
8	7	G246	202269_x_at	GBP1 Chr:1p22.2
9	8	G246	202270_at	GBP1 Chr:1p22.2
10	68	G246	231577_s_at	GBP1 Chr:1p22.2
11	18	G246	203964_at	NMI Chr:2p24.3-q21.3
12	30	G246	206133_at	HSXIAPAF1 Chr:17p13.2
13	65	G246	228617_at	HSXIAPAF1 Chr:17p13.2
14	70	G246	232375_at	--- ---
15	35	G246	209969_s_at	STAT1 Chr:2q32.2
16	60	G244 G246	226757_at	IFIT2 Chr:10q23-q25
17	66	G244 G246	229450_at	IFIT4 Chr:10q24
18	45	G244 G246	218543_s_at	ZC3HDC1 Chr:7q34
19	6	G244 G246	202086_at	MX1 Chr:21q22.3
20	10	G244 G246	202411_at	IFI27 Chr:14q32
21	26	G244 G246	205483_s_at	G1P2 Chr:1p36.33
22	22	G244 G246	204415_at	G1P3 Chr:1p35
23	41	G244 G246	214059_at	IFI44 Chr:1p31.1
24	50	G244 G246	219352_at	FLJ20637 Chr:4q22.1
25	52	G244 G246	219863_at	CEB1 Chr:4q22.1-q23
26	17	G244 G246	203153_at	IFIT1 Chr:10q25-q26
27	62	G244 G246	228152_s_at	FLJ31033 Chr:4q32.3
28	44	G244 G246	218400_at	OAS3 Chr:12q24.2
29	15	G244 G246	202869_at	OAS1 Chr:12q24.1
30	64	G244 G246	228607_at	OAS2 Chr:12q24.2
31	24	G244 G246	204972_at	OAS2 Chr:12q24.2
32	25	G244 G246	204994_at	MX2 Chr:21q22.3
33	27	G244 G246	205552_s_at	OAS1 Chr:12q24.1
34	72	G244 G246	235276_at	EPSTI1 Chr:13q13.3
35	23	G244 G246	204439_at	C1orf29 Chr:1p31.1
36	42	G244 G246	214453_s_at	IFI44 Chr:1p31.1
37	46	G244 G246	218943_s_at	DDX58 Chr:9p12
38	71	G244 G246	235157_at	--- ---
39	40	G244 G246	213797_at	cig5 Chr:2p25.2
40	76	G244 G246	242625_at	cig5 Chr:2p25.2
41	48	G244 G246	219209_at	MDA5 Chr:2p24.3-q24.3
42	49	G244 G246	219211_at	USP18 Chr:22q11.21
43	47	G244 G246	218986_s_at	FLJ20035 Chr:4q32.3
44	59	G244 G246	226702_at	LOC129607 Chr:2p25.2
45	51	G244 G246	219684_at	IFRG28 Chr:3q28
46	63	G244 G246	228531_at	FLJ20073 Chr:7q21.3
47	5	G245 G246	201641_at	BST2 Chr:19p13.2
48	29	G245 G246	206082_at	HCP5 Chr:6p21.3
49	32	G245 G246	209040_s_at	PSMB8 Chr:6p21.3
50	9	G245 G246	202307_s_at	TAP1 Chr:6p21.3
51	16	G245 G246	203148_s_at	TRIM14 Chr:9q31.1
52	33	G245 G246	209417_s_at	IFI35 Chr:17q21
53	21	G245 G246	204279_at	PSMB9 Chr:6p21.3
54	79	G245 G246	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
55	3	G245 G246	200887_s_at	STAT1 Chr:2q32.2
56	80	G245 G246	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
57	78	G245 G246	38241_at	BTN3A3 Chr:6p21.3
58	53	G245 G246	223220_s_at	BAL Chr:3q13-q21
59	56	G245 G246	225415_at	BBAP Chr:3q21.1
60	57	G245 G246	226474_at	NOD27 Chr:16q13
61	43	G245 G246	217933_s_at	LAP3 Chr:4p15.33
62	34	G246	209846_s_at	BTN3A2 Chr:6p22.1
63	54	G246	223434_at	GBP3 Chr:1p22.2
64	58	G246	226603_at	FLJ39885 Chr:7q21.3
65	67	G246	230036_at	FLJ39885 Chr:7q21.3
66	73	G246	235643_at	FLJ39885 Chr:7q21.3
67	77	G246	243271_at	--- ---
68	36	G246	210705_s_at	TRIM5 Chr:11p15
69	2		1552703_s_at	CASP1 Chr:11q23
70	1		1552701_a_at	COP Chr:11q22
71	28		206011_at	CASP1 Chr:11q23
72	37		211368_s_at	CASP1 Chr:11q23
73	55		225171_at	ARHGAP18 Chr:6q23.1
74	61		227458_at	PDCD1LG1 Chr:9p24
75	69		232024_at	HIMAP2 Chr:7q36.1
76	74		239587_at	--- ---
77	11		202430_s_at	PLSCR1 Chr:3q23
78	12		202446_s_at	PLSCR1 Chr:3q23
79	75		241916_at	PLSCR1 Chr:3q23
80	39		213293_s_at	TRIM22 Chr:11p15

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:30:36

G12_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC