G12_using_S3

Super-paramagnetic Clustering of 80 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	1	1552701_a_at	COP Chr:11q22
2	17	203153_at	IFIT1 Chr:10q25-q26
3	4	200904_at	HLA-E Chr:6p21.3
4	8	202270_at	GBP1 Chr:1p22.2
5	9	202307_s_at	TAP1 Chr:6p21.3
6	11	202430_s_at	PLSCR1 Chr:3q23
7	20	204205_at	APOBEC3G Chr:22q13.1-q13.2
8	21	204279_at	PSMB9 Chr:6p21.3
9	6	202086_at	MX1 Chr:21q22.3
10	14	202864_s_at	SP100 Chr:2q37.1
11	22	204415_at	G1P3 Chr:1p35
12	74	239587_at	--- ---
13	27	205552_s_at	OAS1 Chr:12q24.1
14	5	201641_at	BST2 Chr:19p13.2
15	31	208729_x_at	HLA-B Chr:6p21.3
16	32	209040_s_at	PSMB8 Chr:6p21.3
17	33	209417_s_at	IFI35 Chr:17q21
18	16	203148_s_at	TRIM14 Chr:9q31.1
19	38	211911_x_at	HLA-C Chr:6p21.3
20	34	209846_s_at	BTN3A2 Chr:6p22.1
21	26	205483_s_at	G1P2 Chr:1p36.33
22	45	218543_s_at	ZC3HDC1 Chr:7q34
23	56	225415_at	BBAP Chr:3q21.1
24	42	214453_s_at	IFI44 Chr:1p31.1
25	52	219863_at	CEB1 Chr:4q22.1-q23
26	63	228531_at	FLJ20073 Chr:7q21.3
27	18	203964_at	NMI Chr:2p24.3-q21.3
28	58	226603_at	FLJ39885 Chr:7q21.3
29	53	223220_s_at	BAL Chr:3q13-q21
30	78	38241_at	BTN3A3 Chr:6p21.3
31	19	204070_at	RARRES3 Chr:11q23
32	60	226757_at	IFIT2 Chr:10q23-q25
33	66	229450_at	IFIT4 Chr:10q24
34	67	230036_at	FLJ39885 Chr:7q21.3
35	23	204439_at	C1orf29 Chr:1p31.1
36	3	200887_s_at	STAT1 Chr:2q32.2
37	35	209969_s_at	STAT1 Chr:2q32.2
38	68	231577_s_at	GBP1 Chr:1p22.2
39	79	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
40	2	1552703_s_at	CASP1 Chr:11q23
41	12	202446_s_at	PLSCR1 Chr:3q23
42	24	204972_at	OAS2 Chr:12q24.2
43	39	213293_s_at	TRIM22 Chr:11p15
44	48	219209_at	MDA5 Chr:2p24.3-q24.3
45	70	232375_at	--- ---
46	73	235643_at	FLJ39885 Chr:7q21.3
47	15	202869_at	OAS1 Chr:12q24.1
48	40	213797_at	cig5 Chr:2p25.2
49	37	211368_s_at	CASP1 Chr:11q23
50	13	202863_at	SP100 Chr:2q37.1
51	43	217933_s_at	LAP3 Chr:4p15.33
52	55	225171_at	ARHGAP18 Chr:6q23.1
53	30	206133_at	HSXIAPAF1 Chr:17p13.2
54	47	218986_s_at	FLJ20035 Chr:4q32.3
55	7	202269_x_at	GBP1 Chr:1p22.2
56	36	210705_s_at	TRIM5 Chr:11p15
57	44	218400_at	OAS3 Chr:12q24.2
58	51	219684_at	IFRG28 Chr:3q28
59	54	223434_at	GBP3 Chr:1p22.2
60	65	228617_at	HSXIAPAF1 Chr:17p13.2
61	57	226474_at	NOD27 Chr:16q13
62	77	243271_at	--- ---
63	80	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
64	25	204994_at	MX2 Chr:21q22.3
65	62	228152_s_at	FLJ31033 Chr:4q32.3
66	28	206011_at	CASP1 Chr:11q23
67	29	206082_at	HCP5 Chr:6p21.3
68	64	228607_at	OAS2 Chr:12q24.2
69	69	232024_at	HIMAP2 Chr:7q36.1
70	72	235276_at	EPSTI1 Chr:13q13.3
71	76	242625_at	cig5 Chr:2p25.2
72	41	214059_at	IFI44 Chr:1p31.1
73	46	218943_s_at	DDX58 Chr:9p12
74	61	227458_at	PDCD1LG1 Chr:9p24
75	59	226702_at	LOC129607 Chr:2p25.2
76	50	219352_at	FLJ20637 Chr:4q22.1
77	10	202411_at	IFI27 Chr:14q32
78	71	235157_at	--- ---
79	75	241916_at	PLSCR1 Chr:3q23
80	49	219211_at	USP18 Chr:22q11.21

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	21
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:28:47

G12_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC