G12_using_S1

Super-paramagnetic Clustering of 80 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	65		228617_at	HSXIAPAF1 Chr:17p13.2
2	30		206133_at	HSXIAPAF1 Chr:17p13.2
3	38		211911_x_at	HLA-C Chr:6p21.3
4	31		208729_x_at	HLA-B Chr:6p21.3
5	80	G242	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
6	79	G242	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
7	3	G242	200887_s_at	STAT1 Chr:2q32.2
8	51	G239 G240 G242	219684_at	IFRG28 Chr:3q28
9	46	G239 G240 G242	218943_s_at	DDX58 Chr:9p12
10	40	G239 G240 G242	213797_at	cig5 Chr:2p25.2
11	10	G239 G240 G242	202411_at	IFI27 Chr:14q32
12	26	G239 G240 G242	205483_s_at	G1P2 Chr:1p36.33
13	49	G239 G240 G242	219211_at	USP18 Chr:22q11.21
14	59	G239 G240 G242	226702_at	LOC129607 Chr:2p25.2
15	66	G239 G240 G242	229450_at	IFIT4 Chr:10q24
16	60	G239 G240 G242	226757_at	IFIT2 Chr:10q23-q25
17	71	G239 G240 G242	235157_at	--- ---
18	76	G239 G240 G242	242625_at	cig5 Chr:2p25.2
19	17	G239 G240 G242	203153_at	IFIT1 Chr:10q25-q26
20	23	G239 G240 G242	204439_at	C1orf29 Chr:1p31.1
21	6	G239 G240 G242	202086_at	MX1 Chr:21q22.3
22	50	G239 G240 G242	219352_at	FLJ20637 Chr:4q22.1
23	22	G239 G240 G242	204415_at	G1P3 Chr:1p35
24	24	G240 G242	204972_at	OAS2 Chr:12q24.2
25	27	G240 G242	205552_s_at	OAS1 Chr:12q24.1
26	15	G240 G242	202869_at	OAS1 Chr:12q24.1
27	44	G240 G242	218400_at	OAS3 Chr:12q24.2
28	64	G240 G242	228607_at	OAS2 Chr:12q24.2
29	41	G240 G242	214059_at	IFI44 Chr:1p31.1
30	42	G240 G242	214453_s_at	IFI44 Chr:1p31.1
31	35	G240 G242	209969_s_at	STAT1 Chr:2q32.2
32	70	G240 G242	232375_at	--- ---
33	57	G242	226474_at	NOD27 Chr:16q13
34	4		200904_at	HLA-E Chr:6p21.3
35	19		204070_at	RARRES3 Chr:11q23
36	29	G243	206082_at	HCP5 Chr:6p21.3
37	8	G243	202270_at	GBP1 Chr:1p22.2
38	7	G243	202269_x_at	GBP1 Chr:1p22.2
39	68	G243	231577_s_at	GBP1 Chr:1p22.2
40	21	G241 G243	204279_at	PSMB9 Chr:6p21.3
41	9	G241 G243	202307_s_at	TAP1 Chr:6p21.3
42	32	G241 G243	209040_s_at	PSMB8 Chr:6p21.3
43	18	G241 G243	203964_at	NMI Chr:2p24.3-q21.3
44	33	G241 G243	209417_s_at	IFI35 Chr:17q21
45	16	G241 G243	203148_s_at	TRIM14 Chr:9q31.1
46	56	G241 G243	225415_at	BBAP Chr:3q21.1
47	5	G241 G243	201641_at	BST2 Chr:19p13.2
48	53	G241 G243	223220_s_at	BAL Chr:3q13-q21
49	12	G241 G243	202446_s_at	PLSCR1 Chr:3q23
50	43	G241 G243	217933_s_at	LAP3 Chr:4p15.33
51	11	G241 G243	202430_s_at	PLSCR1 Chr:3q23
52	75	G241 G243	241916_at	PLSCR1 Chr:3q23
53	36	G241 G243	210705_s_at	TRIM5 Chr:11p15
54	39	G241 G243	213293_s_at	TRIM22 Chr:11p15
55	13	G243	202863_at	SP100 Chr:2q37.1
56	14	G243	202864_s_at	SP100 Chr:2q37.1
57	20	G243	204205_at	APOBEC3G Chr:22q13.1-q13.2
58	47	G243	218986_s_at	FLJ20035 Chr:4q32.3
59	48	G243	219209_at	MDA5 Chr:2p24.3-q24.3
60	52	G243	219863_at	CEB1 Chr:4q22.1-q23
61	54	G243	223434_at	GBP3 Chr:1p22.2
62	58	G243	226603_at	FLJ39885 Chr:7q21.3
63	67	G243	230036_at	FLJ39885 Chr:7q21.3
64	62	G243	228152_s_at	FLJ31033 Chr:4q32.3
65	63	G243	228531_at	FLJ20073 Chr:7q21.3
66	45	G243	218543_s_at	ZC3HDC1 Chr:7q34
67	73	G243	235643_at	FLJ39885 Chr:7q21.3
68	77	G243	243271_at	--- ---
69	34	G243	209846_s_at	BTN3A2 Chr:6p22.1
70	78	G243	38241_at	BTN3A3 Chr:6p21.3
71	1		1552701_a_at	COP Chr:11q22
72	2		1552703_s_at	CASP1 Chr:11q23
73	55		225171_at	ARHGAP18 Chr:6q23.1
74	37		211368_s_at	CASP1 Chr:11q23
75	28		206011_at	CASP1 Chr:11q23
76	61		227458_at	PDCD1LG1 Chr:9p24
77	69		232024_at	HIMAP2 Chr:7q36.1
78	74		239587_at	--- ---
79	25		204994_at	MX2 Chr:21q22.3
80	72		235276_at	EPSTI1 Chr:13q13.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:26:22

G12_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC