G11_using_S3

Super-paramagnetic Clustering of 15 points in a 4 dimensional space.

Each point is a row.

Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

    • PCA of points

     

    K Mutual Nearest Neighbors (K=2)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes
    14 204913_s_atSOX11 Chr:2p25
    215 232668_at--- ---
    37 205347_s_atTMSNB Chr:xq21.33-q22.3
    45 204914_s_atSOX11 Chr:2p25
    510 220898_at--- ---
    612 228144_atZNF300 Chr:5q33.1
    714 229700_atLOC148203 Chr:19p13.11
    86 204915_s_atSOX11 Chr:2p25
    93 201417_atSOX4 Chr:6p22.3
    109 213668_s_atSOX4 Chr:6p22.3
    111 1569316_at--- ---
    128 206915_atNKX2-2 Chr:20pter-q11.23
    132 201416_atSOX4 Chr:6p22.3
    1413 228790_atMGC39325 Chr:8q12.1
    1511 227921_at--- ---

    Samples Names
    12148.cel
    231553.cel
    311076.cel
    441780.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data

    Parameters for SPC

    K (nearest neighbors)2
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3
    Created by SPC_HTML_REPORT on 12-Aug-2004 01:22:42