G10_using_S6

Super-paramagnetic Clustering of 95 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1553422_s_at	A2BP1 Chr:16p13.3
2	55		221217_s_at	A2BP1 Chr:16p13.3
3	53	G235 G237 G238	220030_at	STYK1 Chr:12p13.31
4	36	G235 G237 G238	210227_at	DLGAP2 Chr:8p23
5	94	G235 G237 G238	244118_at	GABRA1 Chr:5q34-q35
6	60	G235 G237 G238	224650_at	MAL2 Chr:8q23
7	77	G235 G237 G238	233002_at	KIAA1622 Chr:14q32.2
8	30	G235 G237 G238	206678_at	GABRA1 Chr:5q34-q35
9	3	G235 G237 G238	1553864_at	DKFZp761H2121 Chr:10q26.13
10	80	G235 G237 G238	237384_x_at	--- ---
11	29	G235 G237 G238	206456_at	GABRA5 Chr:15q11.2-q12
12	28	G235 G237 G238	206376_at	SLC6A15 Chr:12q21.3
13	24	G235 G237 G238	205635_at	HAPIP Chr:3q21.2
14	84	G235 G237 G238	239579_at	ABHD7 Chr:1p22.1
15	26	G235 G237 G238	205827_at	CCK Chr:3p22-p21.3
16	90	G235 G237 G238	242404_at	--- ---
17	6	G235 G237 G238	1556351_at	HCN1 Chr:5p12
18	87	G235 G237 G238	241399_at	TAFA2 Chr:12q13.3-q14.1
19	15	G235 G237 G238	203998_s_at	SYT1 Chr:12cen-q21
20	76	G235 G237 G238	232426_at	--- ---
21	46	G235 G237 G238	215241_at	TMEM16C Chr:11p14.3
22	39	G235 G237 G238	213921_at	SST Chr:3q28
23	49	G235 G237 G238	219425_at	SULT4A1 Chr:22q13.2-q13.31
24	95	G235 G237 G238	52837_at	KIAA1644 Chr:22q13
25	89	G237 G238	241807_x_at	--- ---
26	8	G237 G238	1557122_s_at	--- ---
27	4	G237 G238	1556095_at	UNC13C Chr:15q21.1
28	7	G237 G238	1556366_s_at	FLJ33708 Chr:6p24.3
29	52	G237 G238	219937_at	TRHDE Chr:12q15-q21
30	71	G237 G238	230137_at	FLJ30834 Chr:4q27
31	40	G238	214044_at	RYR2 Chr:1q42.1-q43
32	51	G238	219671_at	HPCAL4 Chr:1p34.2
33	23	G238	205414_s_at	KIAA0672 Chr:17p12
34	73	G238	230551_at	--- ---
35	58	G238	224164_at	TPM3 Chr:1q21.2
36	81	G238	238786_at	--- ---
37	65	G238	227702_at	CYP4X1 Chr:1p33
38	74	G238	230698_at	--- ---
39	54	G238	220359_s_at	ARPP-21 Chr:3p22.1
40	88	G238	241672_at	LOC400120 Chr:13q13.2
41	93	G238	243929_at	--- ---
42	33	G236	209726_at	CA11 Chr:19q13.3
43	37	G236	210247_at	SYN2 Chr:3p25
44	19	G236	204546_at	KIAA0513 Chr:16q24.1
45	14	G236	203798_s_at	VSNL1 Chr:2p24.3
46	17	G236	204081_at	NRGN Chr:11q24
47	75	G236	231489_x_at	--- ---
48	22	G236	205113_at	NEF3 Chr:8p21
49	64	G236	227053_at	PACSIN1 Chr:6p21.3
50	5	G236	1556096_s_at	UNC13C Chr:15q21.1
51	44	G236	214945_at	NY-REN-7 Chr:5q35.3
52	18	G236	204229_at	SLC17A7 Chr:19q13
53	67	G236	229039_at	SYN2 Chr:3p25
54	50	G236	219659_at	ATP8A2 Chr:13q12-13
55	1	G236	1552714_at	CREG2 Chr:2q12.1
56	32	G236	209556_at	NCDN Chr:1p34.3
57	16	G236	203999_at	SYT1 Chr:12cen-q21
58	86	G236	239767_at	--- ---
59	85	G236	239765_at	--- ---
60	61	G236	225111_s_at	NAPB Chr:20p12.3-p11.21
61	45	G236	214956_at	--- ---
62	79	G236	236456_at	PTPN5 Chr:11p15.1
63	35	G236	210040_at	SLC12A5 Chr:20q13.12
64	43	G236	214811_at	KIAA0318 Chr:12q24.33
65	63	G236	226382_at	LOC283070 Chr:10p14
66	9	G236	1559545_at	--- ---
67	25	G236	205691_at	SYNGR3 Chr:16p13
68	70	G236	230076_at	FLJ10156 Chr:17p13.2
69	12	G236	202507_s_at	SNAP25 Chr:20p12-p11.2
70	10	G236	1568612_at	GABRG2 Chr:5q31.1-q33.1
71	41	G236	214098_at	KIAA1107 Chr:1p22.1
72	38	G236	213904_at	--- ---
73	59	G236	224209_s_at	GDA Chr:9q21.11-21.33
74	56		223529_at	SYT4 Chr:18q12.3
75	82		238966_at	BRUNOL4 Chr:18q12
76	20		204722_at	SCN3B Chr:11q24.1
77	21		204723_at	SCN3B Chr:11q24.1
78	57		223654_s_at	BRUNOL4 Chr:18q12
79	92		243666_at	BRUNOL4 Chr:18q12
80	34		210016_at	MYT1L Chr:2p25.3
81	72		230262_at	--- ---
82	62		226086_at	SYT13 Chr:11p12-p11
83	42		214230_at	CDC42 Chr:1p36.1
84	78		235066_at	MAP4 Chr:3p21
85	91		242999_at	ARHGEF7 Chr:13q34
86	47		218623_at	HMP19 Chr:5q35.2
87	69		229300_at	--- ---
88	31		206780_at	GAD2 Chr:10p11.23
89	66		228262_at	FLJ14503 Chr:xp22.13
90	48		219308_s_at	AK5 Chr:1p31
91	68		229254_at	DKFZp761N1114 Chr:1q32.1
92	83		239357_at	--- ---
93	13		202712_s_at	CKMT1 Chr:15q15
94	11		202260_s_at	STXBP1 Chr:9q34.1
95	27		206196_s_at	RPIP8 Chr:17q21.31

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:21:07

G10_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC