G10_using_S5

Super-paramagnetic Clustering of 95 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13		202712_s_at	CKMT1 Chr:15q15
2	27		206196_s_at	RPIP8 Chr:17q21.31
3	11		202260_s_at	STXBP1 Chr:9q34.1
4	2		1553422_s_at	A2BP1 Chr:16p13.3
5	55		221217_s_at	A2BP1 Chr:16p13.3
6	19	G233	204546_at	KIAA0513 Chr:16q24.1
7	14	G233	203798_s_at	VSNL1 Chr:2p24.3
8	17	G233	204081_at	NRGN Chr:11q24
9	75	G233	231489_x_at	--- ---
10	22	G233	205113_at	NEF3 Chr:8p21
11	64	G233	227053_at	PACSIN1 Chr:6p21.3
12	5	G233	1556096_s_at	UNC13C Chr:15q21.1
13	44	G233	214945_at	NY-REN-7 Chr:5q35.3
14	18	G233	204229_at	SLC17A7 Chr:19q13
15	67	G233	229039_at	SYN2 Chr:3p25
16	50	G233	219659_at	ATP8A2 Chr:13q12-13
17	1	G233	1552714_at	CREG2 Chr:2q12.1
18	32	G233	209556_at	NCDN Chr:1p34.3
19	35	G233	210040_at	SLC12A5 Chr:20q13.12
20	43	G233	214811_at	KIAA0318 Chr:12q24.33
21	16	G233	203999_at	SYT1 Chr:12cen-q21
22	86	G233	239767_at	--- ---
23	85	G233	239765_at	--- ---
24	61	G233	225111_s_at	NAPB Chr:20p12.3-p11.21
25	70	G233	230076_at	FLJ10156 Chr:17p13.2
26	25	G233	205691_at	SYNGR3 Chr:16p13
27	63	G233	226382_at	LOC283070 Chr:10p14
28	45	G233	214956_at	--- ---
29	79	G233	236456_at	PTPN5 Chr:11p15.1
30	12	G233	202507_s_at	SNAP25 Chr:20p12-p11.2
31	10	G233	1568612_at	GABRG2 Chr:5q31.1-q33.1
32	9	G233	1559545_at	--- ---
33	59	G233	224209_s_at	GDA Chr:9q21.11-21.33
34	33	G233	209726_at	CA11 Chr:19q13.3
35	37	G233	210247_at	SYN2 Chr:3p25
36	20		204722_at	SCN3B Chr:11q24.1
37	21		204723_at	SCN3B Chr:11q24.1
38	82		238966_at	BRUNOL4 Chr:18q12
39	57		223654_s_at	BRUNOL4 Chr:18q12
40	56		223529_at	SYT4 Chr:18q12.3
41	72		230262_at	--- ---
42	69		229300_at	--- ---
43	34		210016_at	MYT1L Chr:2p25.3
44	47		218623_at	HMP19 Chr:5q35.2
45	62		226086_at	SYT13 Chr:11p12-p11
46	78		235066_at	MAP4 Chr:3p21
47	42		214230_at	CDC42 Chr:1p36.1
48	91		242999_at	ARHGEF7 Chr:13q34
49	92		243666_at	BRUNOL4 Chr:18q12
50	93		243929_at	--- ---
51	36	G232 G234	210227_at	DLGAP2 Chr:8p23
52	94	G232 G234	244118_at	GABRA1 Chr:5q34-q35
53	60	G232 G234	224650_at	MAL2 Chr:8q23
54	77	G232 G234	233002_at	KIAA1622 Chr:14q32.2
55	30	G232 G234	206678_at	GABRA1 Chr:5q34-q35
56	3	G232 G234	1553864_at	DKFZp761H2121 Chr:10q26.13
57	80	G232 G234	237384_x_at	--- ---
58	29	G232 G234	206456_at	GABRA5 Chr:15q11.2-q12
59	28	G232 G234	206376_at	SLC6A15 Chr:12q21.3
60	24	G232 G234	205635_at	HAPIP Chr:3q21.2
61	84	G232 G234	239579_at	ABHD7 Chr:1p22.1
62	26	G232 G234	205827_at	CCK Chr:3p22-p21.3
63	90	G232 G234	242404_at	--- ---
64	54	G232 G234	220359_s_at	ARPP-21 Chr:3p22.1
65	6	G232 G234	1556351_at	HCN1 Chr:5p12
66	87	G232 G234	241399_at	TAFA2 Chr:12q13.3-q14.1
67	15	G232 G234	203998_s_at	SYT1 Chr:12cen-q21
68	46	G232 G234	215241_at	TMEM16C Chr:11p14.3
69	95	G232 G234	52837_at	KIAA1644 Chr:22q13
70	76	G232 G234	232426_at	--- ---
71	49	G232 G234	219425_at	SULT4A1 Chr:22q13.2-q13.31
72	39	G232 G234	213921_at	SST Chr:3q28
73	53	G232 G234	220030_at	STYK1 Chr:12p13.31
74	23	G234	205414_s_at	KIAA0672 Chr:17p12
75	73	G234	230551_at	--- ---
76	65	G234	227702_at	CYP4X1 Chr:1p33
77	88	G234	241672_at	LOC400120 Chr:13q13.2
78	71	G234	230137_at	FLJ30834 Chr:4q27
79	40	G234	214044_at	RYR2 Chr:1q42.1-q43
80	51	G234	219671_at	HPCAL4 Chr:1p34.2
81	7	G234	1556366_s_at	FLJ33708 Chr:6p24.3
82	4	G234	1556095_at	UNC13C Chr:15q21.1
83	52	G234	219937_at	TRHDE Chr:12q15-q21
84	8	G234	1557122_s_at	--- ---
85	89	G234	241807_x_at	--- ---
86	31	G234	206780_at	GAD2 Chr:10p11.23
87	66	G234	228262_at	FLJ14503 Chr:xp22.13
88	38		213904_at	--- ---
89	41		214098_at	KIAA1107 Chr:1p22.1
90	74		230698_at	--- ---
91	58		224164_at	TPM3 Chr:1q21.2
92	81		238786_at	--- ---
93	48		219308_s_at	AK5 Chr:1p31
94	68		229254_at	DKFZp761N1114 Chr:1q32.1
95	83		239357_at	--- ---

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:19:18

G10_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC