G10_using_S4

Super-paramagnetic Clustering of 95 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1553422_s_at	A2BP1 Chr:16p13.3
2	55		221217_s_at	A2BP1 Chr:16p13.3
3	27		206196_s_at	RPIP8 Chr:17q21.31
4	13		202712_s_at	CKMT1 Chr:15q15
5	86		239767_at	--- ---
6	12		202507_s_at	SNAP25 Chr:20p12-p11.2
7	3		1553864_at	DKFZp761H2121 Chr:10q26.13
8	17	G229	204081_at	NRGN Chr:11q24
9	1	G229	1552714_at	CREG2 Chr:2q12.1
10	19	G229	204546_at	KIAA0513 Chr:16q24.1
11	50	G229	219659_at	ATP8A2 Chr:13q12-13
12	76	G229	232426_at	--- ---
13	32	G229	209556_at	NCDN Chr:1p34.3
14	67	G229	229039_at	SYN2 Chr:3p25
15	75	G229	231489_x_at	--- ---
16	6	G229	1556351_at	HCN1 Chr:5p12
17	44	G229	214945_at	NY-REN-7 Chr:5q35.3
18	85	G229	239765_at	--- ---
19	23	G229	205414_s_at	KIAA0672 Chr:17p12
20	5	G229	1556096_s_at	UNC13C Chr:15q21.1
21	93	G229	243929_at	--- ---
22	35	G229	210040_at	SLC12A5 Chr:20q13.12
23	43	G229	214811_at	KIAA0318 Chr:12q24.33
24	18	G229	204229_at	SLC17A7 Chr:19q13
25	22	G229	205113_at	NEF3 Chr:8p21
26	37	G229	210247_at	SYN2 Chr:3p25
27	64	G229	227053_at	PACSIN1 Chr:6p21.3
28	33	G229	209726_at	CA11 Chr:19q13.3
29	73	G229	230551_at	--- ---
30	4	G229	1556095_at	UNC13C Chr:15q21.1
31	24	G229	205635_at	HAPIP Chr:3q21.2
32	28	G229	206376_at	SLC6A15 Chr:12q21.3
33	8	G229	1557122_s_at	--- ---
34	16	G229	203999_at	SYT1 Chr:12cen-q21
35	59	G229	224209_s_at	GDA Chr:9q21.11-21.33
36	40	G229	214044_at	RYR2 Chr:1q42.1-q43
37	51	G229	219671_at	HPCAL4 Chr:1p34.2
38	71	G229	230137_at	FLJ30834 Chr:4q27
39	49	G229	219425_at	SULT4A1 Chr:22q13.2-q13.31
40	63	G229	226382_at	LOC283070 Chr:10p14
41	84	G229	239579_at	ABHD7 Chr:1p22.1
42	25		205691_at	SYNGR3 Chr:16p13
43	61		225111_s_at	NAPB Chr:20p12.3-p11.21
44	7		1556366_s_at	FLJ33708 Chr:6p24.3
45	66		228262_at	FLJ14503 Chr:xp22.13
46	89		241807_x_at	--- ---
47	30	G231	206678_at	GABRA1 Chr:5q34-q35
48	36	G231	210227_at	DLGAP2 Chr:8p23
49	94	G231	244118_at	GABRA1 Chr:5q34-q35
50	60	G231	224650_at	MAL2 Chr:8q23
51	14	G231	203798_s_at	VSNL1 Chr:2p24.3
52	26	G231	205827_at	CCK Chr:3p22-p21.3
53	15	G231	203998_s_at	SYT1 Chr:12cen-q21
54	31	G231	206780_at	GAD2 Chr:10p11.23
55	77	G231	233002_at	KIAA1622 Chr:14q32.2
56	29	G231	206456_at	GABRA5 Chr:15q11.2-q12
57	46	G231	215241_at	TMEM16C Chr:11p14.3
58	80	G231	237384_x_at	--- ---
59	90	G231	242404_at	--- ---
60	39	G231	213921_at	SST Chr:3q28
61	54	G231	220359_s_at	ARPP-21 Chr:3p22.1
62	53	G231	220030_at	STYK1 Chr:12p13.31
63	95	G231	52837_at	KIAA1644 Chr:22q13
64	79		236456_at	PTPN5 Chr:11p15.1
65	10	G230	1568612_at	GABRG2 Chr:5q31.1-q33.1
66	38	G230	213904_at	--- ---
67	41	G230	214098_at	KIAA1107 Chr:1p22.1
68	57	G230	223654_s_at	BRUNOL4 Chr:18q12
69	82	G230	238966_at	BRUNOL4 Chr:18q12
70	92	G230	243666_at	BRUNOL4 Chr:18q12
71	9	G230	1559545_at	--- ---
72	21	G230	204723_at	SCN3B Chr:11q24.1
73	20	G230	204722_at	SCN3B Chr:11q24.1
74	45	G230	214956_at	--- ---
75	11	G230	202260_s_at	STXBP1 Chr:9q34.1
76	62	G230	226086_at	SYT13 Chr:11p12-p11
77	70	G230	230076_at	FLJ10156 Chr:17p13.2
78	34	G230	210016_at	MYT1L Chr:2p25.3
79	56	G230	223529_at	SYT4 Chr:18q12.3
80	47	G230	218623_at	HMP19 Chr:5q35.2
81	69	G230	229300_at	--- ---
82	78	G230	235066_at	MAP4 Chr:3p21
83	72	G230	230262_at	--- ---
84	42	G230	214230_at	CDC42 Chr:1p36.1
85	58	G230	224164_at	TPM3 Chr:1q21.2
86	81	G230	238786_at	--- ---
87	91	G230	242999_at	ARHGEF7 Chr:13q34
88	74	G230	230698_at	--- ---
89	52		219937_at	TRHDE Chr:12q15-q21
90	87		241399_at	TAFA2 Chr:12q13.3-q14.1
91	48		219308_s_at	AK5 Chr:1p31
92	65		227702_at	CYP4X1 Chr:1p33
93	88		241672_at	LOC400120 Chr:13q13.2
94	68		229254_at	DKFZp761N1114 Chr:1q32.1
95	83		239357_at	--- ---

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:17:33

G10_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC