G10_using_S3

Super-paramagnetic Clustering of 95 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=26)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13	202712_s_at	CKMT1 Chr:15q15
2	18	204229_at	SLC17A7 Chr:19q13
3	33	209726_at	CA11 Chr:19q13.3
4	21	204723_at	SCN3B Chr:11q24.1
5	37	210247_at	SYN2 Chr:3p25
6	57	223654_s_at	BRUNOL4 Chr:18q12
7	63	226382_at	LOC283070 Chr:10p14
8	79	236456_at	PTPN5 Chr:11p15.1
9	11	202260_s_at	STXBP1 Chr:9q34.1
10	32	209556_at	NCDN Chr:1p34.3
11	22	205113_at	NEF3 Chr:8p21
12	39	213921_at	SST Chr:3q28
13	17	204081_at	NRGN Chr:11q24
14	27	206196_s_at	RPIP8 Chr:17q21.31
15	50	219659_at	ATP8A2 Chr:13q12-13
16	7	1556366_s_at	FLJ33708 Chr:6p24.3
17	26	205827_at	CCK Chr:3p22-p21.3
18	20	204722_at	SCN3B Chr:11q24.1
19	25	205691_at	SYNGR3 Chr:16p13
20	29	206456_at	GABRA5 Chr:15q11.2-q12
21	41	214098_at	KIAA1107 Chr:1p22.1
22	2	1553422_s_at	A2BP1 Chr:16p13.3
23	45	214956_at	--- ---
24	15	203998_s_at	SYT1 Chr:12cen-q21
25	1	1552714_at	CREG2 Chr:2q12.1
26	19	204546_at	KIAA0513 Chr:16q24.1
27	43	214811_at	KIAA0318 Chr:12q24.33
28	30	206678_at	GABRA1 Chr:5q34-q35
29	42	214230_at	CDC42 Chr:1p36.1
30	9	1559545_at	--- ---
31	24	205635_at	HAPIP Chr:3q21.2
32	94	244118_at	GABRA1 Chr:5q34-q35
33	34	210016_at	MYT1L Chr:2p25.3
34	6	1556351_at	HCN1 Chr:5p12
35	16	203999_at	SYT1 Chr:12cen-q21
36	35	210040_at	SLC12A5 Chr:20q13.12
37	81	238786_at	--- ---
38	28	206376_at	SLC6A15 Chr:12q21.3
39	36	210227_at	DLGAP2 Chr:8p23
40	83	239357_at	--- ---
41	44	214945_at	NY-REN-7 Chr:5q35.3
42	31	206780_at	GAD2 Chr:10p11.23
43	47	218623_at	HMP19 Chr:5q35.2
44	73	230551_at	--- ---
45	48	219308_s_at	AK5 Chr:1p31
46	5	1556096_s_at	UNC13C Chr:15q21.1
47	52	219937_at	TRHDE Chr:12q15-q21
48	38	213904_at	--- ---
49	10	1568612_at	GABRG2 Chr:5q31.1-q33.1
50	40	214044_at	RYR2 Chr:1q42.1-q43
51	53	220030_at	STYK1 Chr:12p13.31
52	70	230076_at	FLJ10156 Chr:17p13.2
53	90	242404_at	--- ---
54	12	202507_s_at	SNAP25 Chr:20p12-p11.2
55	23	205414_s_at	KIAA0672 Chr:17p12
56	8	1557122_s_at	--- ---
57	56	223529_at	SYT4 Chr:18q12.3
58	60	224650_at	MAL2 Chr:8q23
59	69	229300_at	--- ---
60	14	203798_s_at	VSNL1 Chr:2p24.3
61	86	239767_at	--- ---
62	58	224164_at	TPM3 Chr:1q21.2
63	4	1556095_at	UNC13C Chr:15q21.1
64	65	227702_at	CYP4X1 Chr:1p33
65	87	241399_at	TAFA2 Chr:12q13.3-q14.1
66	89	241807_x_at	--- ---
67	61	225111_s_at	NAPB Chr:20p12.3-p11.21
68	68	229254_at	DKFZp761N1114 Chr:1q32.1
69	85	239765_at	--- ---
70	92	243666_at	BRUNOL4 Chr:18q12
71	59	224209_s_at	GDA Chr:9q21.11-21.33
72	62	226086_at	SYT13 Chr:11p12-p11
73	72	230262_at	--- ---
74	74	230698_at	--- ---
75	77	233002_at	KIAA1622 Chr:14q32.2
76	71	230137_at	FLJ30834 Chr:4q27
77	78	235066_at	MAP4 Chr:3p21
78	46	215241_at	TMEM16C Chr:11p14.3
79	80	237384_x_at	--- ---
80	84	239579_at	ABHD7 Chr:1p22.1
81	3	1553864_at	DKFZp761H2121 Chr:10q26.13
82	76	232426_at	--- ---
83	88	241672_at	LOC400120 Chr:13q13.2
84	93	243929_at	--- ---
85	55	221217_s_at	A2BP1 Chr:16p13.3
86	66	228262_at	FLJ14503 Chr:xp22.13
87	82	238966_at	BRUNOL4 Chr:18q12
88	91	242999_at	ARHGEF7 Chr:13q34
89	51	219671_at	HPCAL4 Chr:1p34.2
90	95	52837_at	KIAA1644 Chr:22q13
91	64	227053_at	PACSIN1 Chr:6p21.3
92	54	220359_s_at	ARPP-21 Chr:3p22.1
93	67	229039_at	SYN2 Chr:3p25
94	49	219425_at	SULT4A1 Chr:22q13.2-q13.31
95	75	231489_x_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	26
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:15:45

G10_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=26)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC