G10_using_S1

Super-paramagnetic Clustering of 95 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	12		202507_s_at	SNAP25 Chr:20p12-p11.2
2	10		1568612_at	GABRG2 Chr:5q31.1-q33.1
3	2		1553422_s_at	A2BP1 Chr:16p13.3
4	55		221217_s_at	A2BP1 Chr:16p13.3
5	60	G225 G226 G227	224650_at	MAL2 Chr:8q23
6	94	G225 G226 G227	244118_at	GABRA1 Chr:5q34-q35
7	36	G225 G226 G227	210227_at	DLGAP2 Chr:8p23
8	30	G225 G226 G227	206678_at	GABRA1 Chr:5q34-q35
9	77	G225 G226 G227	233002_at	KIAA1622 Chr:14q32.2
10	3	G225 G226 G227	1553864_at	DKFZp761H2121 Chr:10q26.13
11	80	G225 G226 G227	237384_x_at	--- ---
12	29	G225 G226 G227	206456_at	GABRA5 Chr:15q11.2-q12
13	84	G225 G226 G227	239579_at	ABHD7 Chr:1p22.1
14	26	G225 G226 G227	205827_at	CCK Chr:3p22-p21.3
15	90	G225 G226 G227	242404_at	--- ---
16	28	G225 G226 G227	206376_at	SLC6A15 Chr:12q21.3
17	54	G225 G226 G227	220359_s_at	ARPP-21 Chr:3p22.1
18	6	G225 G226 G227	1556351_at	HCN1 Chr:5p12
19	15	G225 G226 G227	203998_s_at	SYT1 Chr:12cen-q21
20	19	G225 G226 G227	204546_at	KIAA0513 Chr:16q24.1
21	39	G225 G226 G227	213921_at	SST Chr:3q28
22	93	G225 G226 G227	243929_at	--- ---
23	76	G225 G226 G227	232426_at	--- ---
24	49	G225 G226 G227	219425_at	SULT4A1 Chr:22q13.2-q13.31
25	53	G225 G226 G227	220030_at	STYK1 Chr:12p13.31
26	7	G225 G226 G227	1556366_s_at	FLJ33708 Chr:6p24.3
27	71	G225 G226 G227	230137_at	FLJ30834 Chr:4q27
28	40	G225 G226 G227	214044_at	RYR2 Chr:1q42.1-q43
29	51	G225 G226 G227	219671_at	HPCAL4 Chr:1p34.2
30	23	G226 G227	205414_s_at	KIAA0672 Chr:17p12
31	87	G226 G227	241399_at	TAFA2 Chr:12q13.3-q14.1
32	81	G226 G227	238786_at	--- ---
33	31	G226 G227	206780_at	GAD2 Chr:10p11.23
34	66	G226 G227	228262_at	FLJ14503 Chr:xp22.13
35	85	G224 G227	239765_at	--- ---
36	86	G224 G227	239767_at	--- ---
37	61	G224 G227	225111_s_at	NAPB Chr:20p12.3-p11.21
38	45	G224 G227	214956_at	--- ---
39	22	G224 G227	205113_at	NEF3 Chr:8p21
40	35	G224 G227	210040_at	SLC12A5 Chr:20q13.12
41	43	G224 G227	214811_at	KIAA0318 Chr:12q24.33
42	9	G224 G227	1559545_at	--- ---
43	14	G224 G227	203798_s_at	VSNL1 Chr:2p24.3
44	75	G224 G227	231489_x_at	--- ---
45	67	G224 G227	229039_at	SYN2 Chr:3p25
46	16	G224 G227	203999_at	SYT1 Chr:12cen-q21
47	1	G224 G227	1552714_at	CREG2 Chr:2q12.1
48	63	G224 G227	226382_at	LOC283070 Chr:10p14
49	17	G224 G227	204081_at	NRGN Chr:11q24
50	64	G224 G227	227053_at	PACSIN1 Chr:6p21.3
51	32	G224 G227	209556_at	NCDN Chr:1p34.3
52	44	G224 G227	214945_at	NY-REN-7 Chr:5q35.3
53	18	G224 G227	204229_at	SLC17A7 Chr:19q13
54	50	G224 G227	219659_at	ATP8A2 Chr:13q12-13
55	25	G224 G227	205691_at	SYNGR3 Chr:16p13
56	74	G224 G227	230698_at	--- ---
57	59	G224 G227	224209_s_at	GDA Chr:9q21.11-21.33
58	70	G224 G227	230076_at	FLJ10156 Chr:17p13.2
59	33	G224 G227	209726_at	CA11 Chr:19q13.3
60	37	G224 G227	210247_at	SYN2 Chr:3p25
61	79	G224 G227	236456_at	PTPN5 Chr:11p15.1
62	41	G224 G227	214098_at	KIAA1107 Chr:1p22.1
63	89		241807_x_at	--- ---
64	46		215241_at	TMEM16C Chr:11p14.3
65	8		1557122_s_at	--- ---
66	72	G228	230262_at	--- ---
67	82	G228	238966_at	BRUNOL4 Chr:18q12
68	57	G228	223654_s_at	BRUNOL4 Chr:18q12
69	92	G228	243666_at	BRUNOL4 Chr:18q12
70	34	G228	210016_at	MYT1L Chr:2p25.3
71	56	G228	223529_at	SYT4 Chr:18q12.3
72	47	G228	218623_at	HMP19 Chr:5q35.2
73	21	G228	204723_at	SCN3B Chr:11q24.1
74	20	G228	204722_at	SCN3B Chr:11q24.1
75	69	G228	229300_at	--- ---
76	91	G228	242999_at	ARHGEF7 Chr:13q34
77	38	G228	213904_at	--- ---
78	42	G228	214230_at	CDC42 Chr:1p36.1
79	78	G228	235066_at	MAP4 Chr:3p21
80	62	G228	226086_at	SYT13 Chr:11p12-p11
81	27	G228	206196_s_at	RPIP8 Chr:17q21.31
82	58	G228	224164_at	TPM3 Chr:1q21.2
83	11		202260_s_at	STXBP1 Chr:9q34.1
84	13		202712_s_at	CKMT1 Chr:15q15
85	5		1556096_s_at	UNC13C Chr:15q21.1
86	95		52837_at	KIAA1644 Chr:22q13
87	48		219308_s_at	AK5 Chr:1p31
88	24		205635_at	HAPIP Chr:3q21.2
89	4		1556095_at	UNC13C Chr:15q21.1
90	52		219937_at	TRHDE Chr:12q15-q21
91	73		230551_at	--- ---
92	68		229254_at	DKFZp761N1114 Chr:1q32.1
93	83		239357_at	--- ---
94	65		227702_at	CYP4X1 Chr:1p33
95	88		241672_at	LOC400120 Chr:13q13.2

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:13:12

G10_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC