S6_using_G9

Super-paramagnetic Clustering of 74 points in a 32 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	19	S739 S757	1553.cel
2	13	S739 S757	1437.cel
3	16	S739 S757	148.cel
4	4	S739 S757	1076.cel
5	25	S739 S757	1780.cel
6	12	S753 S757	1430.cel
7	23	S753 S757	1621.cel
8	47	S753 S757	360.cel
9	1	S753 S757	100R.cel
10	15	S753 S757	147.cel
11	28	S753 S757	218.cel
12	7	S753 S757	129.cel
13	34	S753 S757	269.cel
14	2	S753 S757	104.cel
15	42	S753 S757	328.cel
16	39	S753 S757	30.cel
17	63	S753 S757	63.cel
18	22	S747 S752 S753 S757	159.cel
19	32	S747 S752 S753 S757	246.cel
20	74	S747 S752 S753 S757	ge205.cel
21	51	S747 S752 S753 S757	444.cel
22	30	S747 S752 S753 S757	236.cel
23	43	S747 S752 S753 S757	344.cel
24	58	S747 S752 S753 S757	558.cel
25	59	S747 S752 S753 S757	563.cel
26	46	S752 S753 S757	356bis.cel
27	55	S752 S753 S757	527.cel
28	26	S753 S757	1854R.cel
29	5	S745 S748 S753 S757	12.cel
30	17	S742 S745 S748 S753 S757	1497R.cel
31	35	S742 S745 S748 S753 S757	274.cel
32	9	S742 S745 S748 S753 S757	1317.cel
33	69	S742 S745 S748 S753 S757	90.cel
34	57	S748 S753 S757	547.cel
35	54	S753 S757	506.cel
36	33	S753 S757	254.cel
37	18	S743 S751 S753 S757	15.cel
38	31	S743 S751 S753 S757	242.cel
39	27	S743 S751 S753 S757	190.cel
40	36	S743 S751 S753 S757	283.cel
41	44	S743 S751 S753 S757	345.cel
42	66	S751 S753 S757	80.cel
43	11	S749 S753 S757	1399.cel
44	24	S749 S753 S757	1622R.cel
45	45	S741 S749 S753 S757	349.cel
46	40	S741 S749 S753 S757	300.cel
47	10	S741 S749 S753 S757	1360.cel
48	70	S741 S749 S753 S757	93.cel
49	8	S741 S749 S753 S757	1308.cel
50	38	S741 S749 S753 S757	288.cel
51	48	S740 S744 S749 S753 S757	390.cel
52	52	S740 S744 S749 S753 S757	458.cel
53	21	S740 S744 S749 S753 S757	157.cel
54	71	S740 S744 S749 S753 S757	94bis.cel
55	67	S744 S749 S753 S757	83.cel
56	37	S744 S749 S753 S757	284.cel
57	56	S744 S749 S753 S757	528bis.cel
58	65	S744 S749 S753 S757	70.cel
59	20	S755 S757	155R.cel
60	64	S755 S757	65R.cel
61	60	S755 S757	566.cel
62	73	S755 S757	ge197.cel
63	14	S750 S754 S756	1453.cel
64	29	S746 S750 S754 S756	222.cel
65	6	S746 S750 S754 S756	1284.cel
66	49	S746 S750 S754 S756	396.cel
67	50	S746 S750 S754 S756	428.cel
68	41	S754 S756	323.cel
69	53	S754 S756	461.cel
70	61	S754 S756	57.cel
71	3	S754 S756	106.cel
72	68	S754 S756	84.cel
73	62	S756	574.cel
74	72	S756	97.cel

Genes Names

1	3	200632_s_at	NDRG1 Chr:8q24.3
2	6	202497_x_at	SLC2A3 Chr:12p13.3
3	11	203108_at	RAI3 Chr:12p13-p12.3
4	7	202627_s_at	SERPINE1 Chr:7q21.3-q22
5	8	202859_x_at	IL8 Chr:4q13-q21
6	13	203438_at	STC2 Chr:5q35.2
7	9	202912_at	ADM Chr:11p15.4
8	10	202934_at	HK2 Chr:2p13
9	19	212171_x_at	VEGF Chr:6p12
10	5	201169_s_at	BHLHB2 Chr:3p26
11	2	1554452_a_at	HIG2 Chr:7q32.2
12	30	226452_at	PDK1 Chr:2q31.1
13	1	1553392_at	FLJ25818 Chr:17q24.1
14	16	210512_s_at	VEGF Chr:6p12
15	18	211527_x_at	VEGF Chr:6p12
16	28	222646_s_at	ERO1L Chr:14q22.1
17	4	200737_at	PGK1 Chr:xq13
18	23	218507_at	HIG2 Chr:7q32.2
19	26	221009_s_at	ANGPTL4 Chr:19p13.3
20	12	203282_at	GBE1 Chr:3p12.3
21	17	210513_s_at	VEGF Chr:6p12
22	14	204298_s_at	LOX Chr:5q23.2
23	21	215446_s_at	--- ---
24	27	221123_x_at	ZNF395 Chr:8p21.1
25	29	223216_x_at	ZNF395 Chr:8p21.1
26	22	218149_s_at	ZNF395 Chr:8p21.1
27	31	232693_s_at	ZNF395 Chr:8p21.1
28	20	212775_at	KIAA0657 Chr:2q36.1
29	15	209122_at	ADFP Chr:9p22.1-p21.3
30	25	219434_at	TREM1 Chr:6p21.1
31	32	242517_at	GPR54 Chr:19p13.3
32	24	219410_at	FLJ10134 Chr:3q12.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 14:02:32

S6_using_G9

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC