S6_using_G8

Super-paramagnetic Clustering of 74 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=18)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	30	236.cel
2	33	254.cel
3	25	1780.cel
4	28	218.cel
5	20	155R.cel
6	2	104.cel
7	21	157.cel
8	31	242.cel
9	41	323.cel
10	7	129.cel
11	34	269.cel
12	10	1360.cel
13	35	274.cel
14	13	1437.cel
15	9	1317.cel
16	5	12.cel
17	71	94bis.cel
18	11	1399.cel
19	16	148.cel
20	61	57.cel
21	14	1453.cel
22	17	1497R.cel
23	22	159.cel
24	26	1854R.cel
25	50	428.cel
26	60	566.cel
27	32	246.cel
28	36	283.cel
29	43	344.cel
30	39	30.cel
31	48	390.cel
32	51	444.cel
33	58	558.cel
34	54	506.cel
35	63	63.cel
36	70	93.cel
37	24	1622R.cel
38	40	300.cel
39	4	1076.cel
40	8	1308.cel
41	19	1553.cel
42	27	190.cel
43	18	15.cel
44	44	345.cel
45	55	527.cel
46	42	328.cel
47	37	284.cel
48	52	458.cel
49	29	222.cel
50	59	563.cel
51	49	396.cel
52	72	97.cel
53	62	574.cel
54	67	83.cel
55	3	106.cel
56	6	1284.cel
57	15	147.cel
58	45	349.cel
59	46	356bis.cel
60	69	90.cel
61	12	1430.cel
62	53	461.cel
63	23	1621.cel
64	57	547.cel
65	66	80.cel
66	1	100R.cel
67	74	ge205.cel
68	47	360.cel
69	56	528bis.cel
70	64	65R.cel
71	65	70.cel
72	38	288.cel
73	68	84.cel
74	73	ge197.cel

Genes Names

1	66	218854_at	SART2 Chr:6q22
2	21	203561_at	FCGR2A Chr:1q23
3	62	217388_s_at	KYNU Chr:2q22.3
4	11	201743_at	CD14 Chr:5q31.1
5	46	211429_s_at	--- ---
6	8	201422_at	IFI30 Chr:19p13.1
7	36	206584_at	LY96 Chr:8q13.3
8	32	204971_at	CSTA Chr:3q21
9	68	219607_s_at	MS4A4A Chr:11q12
10	12	202546_at	VAMP8 Chr:2p12-p11.2
11	73	223280_x_at	MS4A6A Chr:11q12.1
12	76	224356_x_at	MS4A6A Chr:11q12.1
13	14	202833_s_at	SERPINA1 Chr:14q32.1
14	26	204174_at	ALOX5AP Chr:13q12
15	88	230550_at	MS4A6A Chr:11q12.1
16	67	219386_s_at	SLAMF8 Chr:1q23.1
17	9	201487_at	CTSC Chr:11q14.1-q14.3
18	69	219666_at	MS4A6A Chr:11q12.1
19	27	204232_at	FCER1G Chr:1q23
20	43	210176_at	TLR1 Chr:4p14
21	59	214770_at	MSR1 Chr:8p22
22	4	1554899_s_at	FCER1G Chr:1q23
23	13	202803_s_at	ITGB2 Chr:21q22.3
24	6	1555728_a_at	MS4A4A Chr:11q12
25	17	202953_at	C1QB Chr:1p36.3-p34.1
26	65	218232_at	C1QA Chr:1p36.3-p34.1
27	56	213566_at	RNASE6 Chr:14q11.2
28	77	225353_s_at	C1QG Chr:1p36.11
29	52	212588_at	PTPRC Chr:1q31-q32
30	5	1555349_a_at	ITGB2 Chr:21q22.3
31	31	204959_at	MNDA Chr:1q22
32	23	204007_at	FCGR3A Chr:1q23
33	10	201721_s_at	LAPTM5 Chr:1p34
34	30	204787_at	Z39IG Chr:xq12-q13.3
35	24	204122_at	TYROBP Chr:19q13.1
36	15	202901_x_at	CTSS Chr:1q21
37	35	206111_at	RNASE2 Chr:14q24-q31
38	83	228532_at	MGC24133 Chr:1p13.2
39	57	214467_at	GPR65 Chr:14q31-q32.1
40	22	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	37	208018_s_at	HCK Chr:20q11-q12
43	89	232617_at	CTSS Chr:1q21
44	18	202957_at	HCLS1 Chr:3q13
45	16	202902_s_at	CTSS Chr:1q21
46	28	204446_s_at	ALOX5 Chr:10q11.2
47	84	229560_at	TLR8 Chr:xp22
48	33	205786_s_at	ITGAM Chr:16p11.2
49	71	220330_s_at	SAMSN1 Chr:21q11
50	81	227266_s_at	FYB Chr:5p13.1
51	72	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	20	203416_at	CD53 Chr:1p13
53	86	229937_x_at	LILRB1 Chr:19q13.4
54	61	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	44	210314_x_at	TNFSF13 Chr:17p13.1
56	3	1552807_a_at	SIGLEC10 Chr:19q13.3
57	79	226068_at	SYK Chr:9q22
58	78	225502_at	DOCK8 Chr:9p24.3
59	64	217983_s_at	RNASET2 Chr:6q27
60	19	203104_at	CSF1R Chr:5q33-q35
61	90	232843_s_at	DOCK8 Chr:9p24.3
62	58	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	82	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	63	217478_s_at	HLA-DMA Chr:6p21.3
65	40	209312_x_at	HLA-DRB1 Chr:6p21.3
66	45	210982_s_at	HLA-DRA Chr:6p21.3
67	60	215193_x_at	HLA-DRB3 Chr:6p21.3
68	38	208306_x_at	HLA-DRB3 Chr:6p21.3
69	39	208894_at	HLA-DRA Chr:6p21.3
70	29	204670_x_at	HLA-DRB3 Chr:6p21.3
71	41	209619_at	CD74 Chr:5q32
72	54	212998_x_at	HLA-DQB1 Chr:6p21.3
73	47	211654_x_at	HLA-DQB1 Chr:6p21.3
74	51	211991_s_at	HLA-DPA1 Chr:6p21.3
75	74	223343_at	MS4A7 Chr:11q12
76	7	201137_s_at	HLA-DPB1 Chr:6p21.3
77	48	211656_x_at	HLA-DQB1 Chr:6p21.3
78	42	209823_x_at	HLA-DQB1 Chr:6p21.3
79	2	1552386_at	FLJ33641 Chr:5q12.1
80	55	213537_at	HLA-DPA1 Chr:6p21.3
81	53	212671_s_at	HLA-DQA1 Chr:6p21.3
82	80	227265_at	--- ---
83	50	211990_at	HLA-DPA1 Chr:6p21.3
84	87	230391_at	--- ---
85	70	220146_at	TLR7 Chr:xp22.3
86	34	205997_at	ADAM28 Chr:8p21.2
87	75	223620_at	GPR34 Chr:xp11.4-p11.3
88	49	211742_s_at	EVI2B Chr:17q11.2
89	85	229723_at	TAGAP Chr:6q25.3
90	25	204150_at	STAB1 Chr:3p21.31
91	91	38487_at	STAB1 Chr:3p21.31

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	18
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 13:31:20

S6_using_G8

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=18)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC