S6_using_G7

Super-paramagnetic Clustering of 74 points in a 77 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4		1076.cel
2	8		1308.cel
3	31		242.cel
4	16		148.cel
5	19		1553.cel
6	25		1780.cel
7	10		1360.cel
8	36		283.cel
9	13		1437.cel
10	44		345.cel
11	66		80.cel
12	18		15.cel
13	70		93.cel
14	37		284.cel
15	32		246.cel
16	2		104.cel
17	30		236.cel
18	38		288.cel
19	56		528bis.cel
20	15	S738	147.cel
21	5	S738	12.cel
22	29	S738	222.cel
23	35	S738	274.cel
24	51	S738	444.cel
25	17	S738	1497R.cel
26	69	S738	90.cel
27	71	S738	94bis.cel
28	27	S738	190.cel
29	28	S738	218.cel
30	40	S738	300.cel
31	1	S738	100R.cel
32	34	S738	269.cel
33	12	S738	1430.cel
34	7	S738	129.cel
35	39	S738	30.cel
36	45	S738	349.cel
37	48	S738	390.cel
38	52	S738	458.cel
39	57	S738	547.cel
40	3	S738	106.cel
41	9	S738	1317.cel
42	22	S738	159.cel
43	67	S738	83.cel
44	46	S738	356bis.cel
45	62	S738	574.cel
46	58	S738	558.cel
47	74	S738	ge205.cel
48	21	S738	157.cel
49	11	S738	1399.cel
50	26	S738	1854R.cel
51	23	S738	1621.cel
52	53	S738	461.cel
53	41	S738	323.cel
54	43	S738	344.cel
55	6	S738	1284.cel
56	14	S738	1453.cel
57	42	S738	328.cel
58	49	S738	396.cel
59	50	S738	428.cel
60	24	S738	1622R.cel
61	54	S738	506.cel
62	55	S738	527.cel
63	61	S738	57.cel
64	72	S738	97.cel
65	47	S738	360.cel
66	60	S738	566.cel
67	20		155R.cel
68	33		254.cel
69	64		65R.cel
70	68		84.cel
71	73		ge197.cel
72	65		70.cel
73	59		563.cel
74	63		63.cel

Genes Names

1	15	202404_s_at	COL1A2 Chr:7q22.1
2	1	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
3	39	211161_s_at	--- ---
4	56	215076_s_at	COL3A1 Chr:2q31
5	62	221730_at	COL5A2 Chr:2q14-q32
6	14	202403_s_at	COL1A2 Chr:7q22.1
7	5	201505_at	LAMB1 Chr:7q22
8	7	201852_x_at	COL3A1 Chr:2q31
9	61	221729_at	COL5A2 Chr:2q14-q32
10	6	201744_s_at	LUM Chr:12q21.3-q22
11	12	202310_s_at	COL1A1 Chr:17q21.3-q22.1
12	34	208690_s_at	PDLIM1 Chr:10q22-q26.3
13	26	204114_at	NID2 Chr:14q21-q22
14	16	202465_at	PCOLCE Chr:7q22
15	21	202998_s_at	LOXL2 Chr:8p21.3-p21.2
16	4	201438_at	COL6A3 Chr:2q37
17	11	202291_s_at	MGP Chr:12p13.1-p12.3
18	51	212489_at	COL5A1 Chr:9q34.2-q34.3
19	50	212488_at	COL5A1 Chr:9q34.2-q34.3
20	22	203325_s_at	COL5A1 Chr:9q34.2-q34.3
21	41	211651_s_at	LAMB1 Chr:7q22
22	13	202375_at	SEC24D Chr:4q27
23	47	212298_at	NRP1 Chr:10p12
24	68	226777_at	ADAM12 Chr:10q26.3
25	20	202952_s_at	ADAM12 Chr:10q26.3
26	54	213790_at	ADAM12 Chr:10q26.3
27	18	202766_s_at	FBN1 Chr:15q21.1
28	53	213139_at	SNAI2 Chr:8q11
29	72	229218_at	COL1A2 Chr:7q22.1
30	45	211980_at	COL4A1 Chr:13q34
31	3	200771_at	LAMC1 Chr:1q31
32	46	211981_at	COL4A1 Chr:13q34
33	65	225799_at	MGC4677 Chr:2p11.2
34	44	211966_at	COL4A2 Chr:13q34
35	30	204844_at	ENPEP Chr:4q25
36	67	226731_at	ITGA1 Chr:5q11.2
37	60	219773_at	NOX4 Chr:11q14.2-q21
38	32	205572_at	ANGPT2 Chr:8p23.1
39	59	219134_at	ELTD1 Chr:1p33-p32
40	28	204677_at	CDH5 Chr:16q22.1
41	48	212364_at	MYO1B Chr:2q12-q34
42	55	214081_at	PLXDC1 Chr:17q21.1
43	2	200700_s_at	KDELR2 Chr:7p22.2
44	38	211148_s_at	ANGPT2 Chr:8p23.1
45	43	211964_at	COL4A2 Chr:13q34
46	75	236034_at	FLJ12847 Chr:8p23.1
47	76	237261_at	FLJ12847 Chr:8p23.1
48	8	202007_at	NID Chr:1q43
49	19	202878_s_at	C1QR1 Chr:20p11.22
50	37	210495_x_at	FN1 Chr:2q34
51	57	216442_x_at	FN1 Chr:2q34
52	25	204083_s_at	TPM2 Chr:9p13.2-p13.1
53	29	204682_at	LTBP2 Chr:14q24
54	10	202202_s_at	LAMA4 Chr:6q21
55	27	204464_s_at	EDNRA Chr:4q31.22
56	33	207714_s_at	SERPINH1 Chr:11q13.5
57	42	211719_x_at	FN1 Chr:2q34
58	49	212464_s_at	FN1 Chr:2q34
59	58	218729_at	LXN Chr:3q25.32
60	64	225681_at	CTHRC1 Chr:8q22.3
61	71	228776_at	--- ---
62	66	226311_at	--- ---
63	74	232458_at	COL3A1 Chr:2q31
64	9	202112_at	VWF Chr:12p13.3
65	73	230061_at	LOC116441 Chr:3q24
66	31	205499_at	SRPUL Chr:xq21.33-q23
67	17	202709_at	FMOD Chr:1q32
68	36	209596_at	DKFZp564I1922 Chr:xp22.33
69	40	211343_s_at	COL13A1 Chr:10q22
70	69	226804_at	FAM20A Chr:17q24.3
71	77	241981_at	FAM20A Chr:17q24.3
72	24	204017_at	KDELR3 Chr:22q13.1
73	35	209156_s_at	COL6A2 Chr:21q22.3
74	63	224833_at	ETS1 Chr:11q23.3
75	23	203851_at	IGFBP6 Chr:12q13
76	52	213125_at	OLFML2B Chr:1q23.1
77	70	227628_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 13:15:22

S6_using_G7

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC