S6_using_G6

Super-paramagnetic Clustering of 74 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	25	S729	1780.cel
2	4	S729	1076.cel
3	16	S729	148.cel
4	36	S729	283.cel
5	19	S729	1553.cel
6	31	S730 S736 S737	242.cel
7	8	S730 S736 S737	1308.cel
8	27	S730 S736 S737	190.cel
9	66	S730 S736 S737	80.cel
10	56	S730 S736 S737	528bis.cel
11	10	S730 S736 S737	1360.cel
12	29	S730 S736 S737	222.cel
13	55	S730 S736 S737	527.cel
14	13	S736 S737	1437.cel
15	44	S736 S737	345.cel
16	33	S737	254.cel
17	58	S737	558.cel
18	48		390.cel
19	1		100R.cel
20	65		70.cel
21	61	S728 S733	57.cel
22	24	S728 S733	1622R.cel
23	54	S728 S733	506.cel
24	28	S728 S733	218.cel
25	14	S733	1453.cel
26	53	S733	461.cel
27	63		63.cel
28	51		444.cel
29	40		300.cel
30	35		274.cel
31	47		360.cel
32	6		1284.cel
33	34		269.cel
34	73		ge197.cel
35	2	S734	104.cel
36	43	S734	344.cel
37	22	S734	159.cel
38	52	S734	458.cel
39	39	S734	30.cel
40	67	S731	83.cel
41	69	S731	90.cel
42	57	S731	547.cel
43	21	S731	157.cel
44	17		1497R.cel
45	42		328.cel
46	50		428.cel
47	62		574.cel
48	5		12.cel
49	11		1399.cel
50	74		ge205.cel
51	59		563.cel
52	23		1621.cel
53	26		1854R.cel
54	49		396.cel
55	72		97.cel
56	18		15.cel
57	41		323.cel
58	64		65R.cel
59	32		246.cel
60	38		288.cel
61	70		93.cel
62	3	S732 S735	106.cel
63	37	S732 S735	284.cel
64	9	S732 S735	1317.cel
65	46	S732 S735	356bis.cel
66	71	S732 S735	94bis.cel
67	15	S732 S735	147.cel
68	30	S732 S735	236.cel
69	7	S735	129.cel
70	45	S735	349.cel
71	12		1430.cel
72	68		84.cel
73	20		155R.cel
74	60		566.cel

Genes Names

1	27	204825_at	MELK Chr:9p13.1
2	19	204162_at	KNTC2 Chr:18p11.31
3	4	202503_s_at	KIAA0101 Chr:15q22.1
4	40	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	49	218039_at	NUSAP1 Chr:15q14
7	66	222848_at	FKSG14 Chr:5p15.2-q12.3
8	52	218662_s_at	HCAP-G Chr:4p16-p15
9	14	203755_at	BUB1B Chr:15q15
10	46	214710_s_at	CCNB1 Chr:5q12
11	16	204026_s_at	ZWINT Chr:10q21-q22
12	9	203213_at	CDC2 Chr:10q21.1
13	22	204244_s_at	ASK Chr:7q21.3
14	36	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	41	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	7	202705_at	CCNB2 Chr:15q21.3
19	54	218755_at	KIF20A Chr:5q31
20	10	203358_s_at	EZH2 Chr:7q35-q36
21	15	203764_at	DLG7 Chr:14q22.2
22	57	219148_at	TOPK Chr:8p21.2
23	8	202870_s_at	CDC20 Chr:1p34.1
24	75	228273_at	FLJ11029 Chr:17q23.2
25	53	218663_at	HCAP-G Chr:4p16-p15
26	59	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	77	228729_at	CCNB1 Chr:5q12
28	12	203554_x_at	PTTG1 Chr:5q35.1
29	18	204146_at	PIR51 Chr:12p13.2-p13.1
30	50	218355_at	KIF4A Chr:xq13.1
31	28	204962_s_at	CENPA Chr:2p24-p21
32	56	218883_s_at	KLIP1 Chr:4q35.1
33	48	218009_s_at	PRC1 Chr:15q26.1
34	42	210559_s_at	CDC2 Chr:10q21.1
35	35	207828_s_at	CENPF Chr:1q32-q41
36	39	209642_at	BUB1 Chr:2q14
37	65	222740_at	ATAD2 Chr:8q24.13
38	68	223381_at	CDCA1 Chr:1q23.2
39	58	219306_at	KNSL7 Chr:3p21.32
40	44	213226_at	PMSCL1 Chr:4q27
41	60	219918_s_at	ASPM Chr:1q31
42	80	230165_at	SGOL2 Chr:2q33.2
43	23	204444_at	KIF11 Chr:10q24.1
44	29	205046_at	CENPE Chr:4q24-q25
45	11	203362_s_at	MAD2L1 Chr:4q27
46	43	213007_at	FLJ10719 Chr:15q25-q26
47	82	236641_at	KIF14 Chr:1pter-q31.3
48	26	204822_at	TTK Chr:6q13-q21
49	38	209172_s_at	CENPF Chr:1q32-q41
50	76	228323_at	AF15Q14 Chr:15q14
51	71	226980_at	XTP1 Chr:5q12.1
52	63	222077_s_at	RACGAP1 Chr:12q13.12
53	51	218585_s_at	RAMP Chr:1q32.1-q32.2
54	64	222680_s_at	RAMP Chr:1q32.1-q32.2
55	25	204641_at	NEK2 Chr:1q32.2-q41
56	83	238756_at	LOC283431 Chr:12q23.3
57	69	224428_s_at	CDCA7 Chr:2q31
58	6	202589_at	TYMS Chr:18p11.32
59	67	223229_at	HSPC150 Chr:1q32.1
60	5	202580_x_at	FOXM1 Chr:12p13
61	20	204170_s_at	CKS2 Chr:9q22
62	55	218875_s_at	FBXO5 Chr:6q25-q26
63	62	222039_at	LOC146909 Chr:17q21.31
64	70	225834_at	MGC57827 ---
65	72	227249_at	NDE1 Chr:16p13.11
66	84	242560_at	FANCD2 Chr:3p26
67	32	206102_at	KIAA0186 Chr:20p11.21
68	17	204033_at	TRIP13 Chr:5p15.33
69	37	208808_s_at	HMGB2 Chr:4q31
70	74	228033_at	E2F7 Chr:12q21.1
71	34	207165_at	HMMR Chr:5q33.2-qter
72	79	229490_s_at	IQGAP3 Chr:1q23.1
73	81	235425_at	SGOL2 Chr:2q33.2
74	47	216237_s_at	MCM5 Chr:22q13.1
75	13	203560_at	GGH Chr:8q12.2
76	21	204240_s_at	SMC2L1 Chr:9q31.2
77	33	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	61	220239_at	KLHL7 Chr:7p15.3
79	45	213906_at	MYBL1 Chr:8q22
80	24	204510_at	CDC7 Chr:1p22
81	73	227350_at	--- ---
82	31	205967_at	HIST1H4C Chr:6p21.3
83	30	205394_at	CHEK1 Chr:11q24-q24
84	78	229305_at	KLIP1 Chr:4q35.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 12:58:24

S6_using_G6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC