S6_using_G5

Super-paramagnetic Clustering of 74 points in a 68 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	10		1360.cel
2	9	S725	1317.cel
3	32	S725	246.cel
4	31	S724 S725	242.cel
5	8	S724 S725	1308.cel
6	11	S724 S725	1399.cel
7	5	S724 S725	12.cel
8	62	S724 S725	574.cel
9	7	S724 S725	129.cel
10	66	S724 S725	80.cel
11	18	S724 S725	15.cel
12	37	S724 S725	284.cel
13	57	S724 S725	547.cel
14	16	S724 S725	148.cel
15	19	S724 S725	1553.cel
16	4	S724 S725	1076.cel
17	25	S724 S725	1780.cel
18	45	S724 S725	349.cel
19	26	S724 S725	1854R.cel
20	20	S724 S725	155R.cel
21	33	S724 S725	254.cel
22	47	S724 S725	360.cel
23	34	S724 S725	269.cel
24	17	S724 S725	1497R.cel
25	23	S724 S725	1621.cel
26	24	S724 S725	1622R.cel
27	28	S724 S725	218.cel
28	6	S724 S725	1284.cel
29	21	S724 S725	157.cel
30	35	S724 S725	274.cel
31	39	S724 S725	30.cel
32	43	S724 S725	344.cel
33	29	S724 S725	222.cel
34	46	S724 S725	356bis.cel
35	69	S724 S725	90.cel
36	59	S724 S725	563.cel
37	72	S724 S725	97.cel
38	61	S724 S725	57.cel
39	41	S724 S725	323.cel
40	12	S724 S725	1430.cel
41	50	S724 S725	428.cel
42	15	S724 S725	147.cel
43	3	S724 S725	106.cel
44	67	S724 S725	83.cel
45	68	S724 S725	84.cel
46	73	S724 S725	ge197.cel
47	49	S724 S725	396.cel
48	71	S724 S725	94bis.cel
49	54	S724 S725	506.cel
50	60	S724 S725	566.cel
51	44	S724 S725	345.cel
52	36	S724 S725	283.cel
53	65	S724 S725	70.cel
54	40	S725	300.cel
55	52	S725	458.cel
56	22	S725	159.cel
57	42	S725	328.cel
58	48	S725	390.cel
59	56	S725	528bis.cel
60	63	S725	63.cel
61	2		104.cel
62	14	S727	1453.cel
63	1	S727	100R.cel
64	13	S727	1437.cel
65	51	S727	444.cel
66	53	S727	461.cel
67	74	S727	ge205.cel
68	27	S727	190.cel
69	55	S727	527.cel
70	30	S726	236.cel
71	38	S726	288.cel
72	58	S726	558.cel
73	64	S726	65R.cel
74	70	S726	93.cel

Genes Names

1	10	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	39	230763_at	LOC128153 Chr:1q41
4	37	229816_at	FLJ23129 Chr:1p31.3
5	31	228100_at	LOC128344 Chr:1p13.2
6	26	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	21	220302_at	MAK Chr:6q22
9	50	235946_at	FLJ32783 Chr:Xp11.23
10	30	227091_at	KIAA1505 Chr:7p12.3
11	41	231077_at	MGC20470 Chr:11p15.4
12	22	220390_at	FLJ23598 Chr:11p11.2
13	23	220591_s_at	FLJ22843 Chr:xp11.4
14	11	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	51	236222_at	AAT1 Chr:3q12-q13.3
17	46	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	15	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	66	243087_at	NYD-SP29 Chr:1p22.3
21	12	205714_s_at	ZMYND10 Chr:3p21.3
22	48	233516_s_at	PF6 Chr:1p12
23	63	240857_at	DNAH9 Chr:17p12
24	54	236909_at	LOC129881 Chr:2q31.1
25	45	231549_at	MGC35194 Chr:1p36.21
26	53	236717_at	LOC165186 Chr:2p23.3
27	62	240065_at	FLJ25333 Chr:5q15
28	56	237281_at	AKAP28 Chr:xq25
29	42	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	34	229169_at	TTC18 Chr:10q22.3
32	67	243802_at	FLJ40427 Chr:3p21.2
33	19	220168_at	CASC1 Chr:12p12.1
34	61	239916_at	LOC146845 Chr:17p13.1
35	24	220636_at	DNAI2 Chr:17q25
36	64	241310_at	--- ---
37	55	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	57	238116_at	DNCL2B Chr:16q23.3
39	60	239776_at	--- Chr:5q22.1
40	38	230093_at	TSGA2 Chr:21q22.3
41	20	220269_at	FLJ23049 Chr:3q26.2
42	13	206197_at	NME5 Chr:5q31
43	52	236325_at	--- ---
44	33	229012_at	C9orf24 Chr:9p13.2
45	27	224463_s_at	MGC13040 Chr:11q22.2
46	58	238327_at	ECGF1 Chr:22q13.33
47	65	241470_x_at	--- ---
48	49	235658_at	--- ---
49	8	202587_s_at	AK1 Chr:9q34.1
50	35	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	17	218876_at	CGI-38 Chr:16q22.1
53	25	222890_at	HSPC065 Chr:16q13
54	18	219703_at	MNS1 Chr:15q21.2
55	28	226872_at	RFX2 Chr:19p13.3-p13.2
56	68	64900_at	CHST5 Chr:16q22.3
57	47	232984_at	HYDIN Chr:16q22.2
58	29	227081_at	DNALI1 Chr:1p35.1
59	43	231319_x_at	KIF9 Chr:3p21.31
60	16	210117_at	SPAG1 Chr:8q22.2
61	9	203397_s_at	GALNT3 Chr:2q24-q31
62	59	238584_at	FLJ22527 Chr:2q37.3
63	32	228450_at	LOC144100 Chr:11p15.2-p15.1
64	40	231068_at	FLJ31196 Chr:17p11.2
65	14	207624_s_at	RPGR Chr:xp11.4
66	36	229331_at	LOC132671 Chr:4q12
67	44	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	17
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 12:38:17

S6_using_G5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC