S6_using_G4

Super-paramagnetic Clustering of 74 points in a 60 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S723	148.cel
2	4	S723	1076.cel
3	19	S723	1553.cel
4	25	S723	1780.cel
5	50	S723	428.cel
6	18	S723	15.cel
7	66	S723	80.cel
8	70	S723	93.cel
9	57	S722	547.cel
10	56	S722	528bis.cel
11	17	S719 S720 S722	1497R.cel
12	23	S719 S720 S722	1621.cel
13	24	S719 S720 S722	1622R.cel
14	26	S719 S720 S722	1854R.cel
15	31	S719 S720 S722	242.cel
16	71	S719 S720 S722	94bis.cel
17	28	S719 S720 S722	218.cel
18	46	S719 S720 S722	356bis.cel
19	35	S719 S720 S722	274.cel
20	49	S719 S720 S722	396.cel
21	72	S719 S720 S722	97.cel
22	6	S719 S720 S722	1284.cel
23	60	S719 S720 S722	566.cel
24	29	S719 S720 S722	222.cel
25	32	S719 S720 S722	246.cel
26	41	S719 S720 S722	323.cel
27	2	S719 S720 S722	104.cel
28	53	S719 S720 S722	461.cel
29	54	S719 S720 S722	506.cel
30	67	S719 S720 S722	83.cel
31	68	S719 S720 S722	84.cel
32	3	S719 S720 S722	106.cel
33	73	S719 S720 S722	ge197.cel
34	58	S719 S720 S722	558.cel
35	42	S719 S720 S722	328.cel
36	9	S719 S720 S722	1317.cel
37	30	S719 S720 S722	236.cel
38	64	S719 S720 S722	65R.cel
39	22	S719 S720 S722	159.cel
40	39	S719 S720 S722	30.cel
41	21	S719 S720 S722	157.cel
42	43	S719 S720 S722	344.cel
43	51	S719 S720 S722	444.cel
44	52	S719 S720 S722	458.cel
45	69	S719 S720 S722	90.cel
46	55	S719 S720 S722	527.cel
47	59	S720 S722	563.cel
48	10	S721 S722	1360.cel
49	13	S721 S722	1437.cel
50	20	S718 S721 S722	155R.cel
51	33	S718 S721 S722	254.cel
52	11	S718 S721 S722	1399.cel
53	38	S718 S721 S722	288.cel
54	65	S718 S721 S722	70.cel
55	1	S721 S722	100R.cel
56	61	S721 S722	57.cel
57	8	S721 S722	1308.cel
58	27	S721 S722	190.cel
59	36	S721 S722	283.cel
60	44	S721 S722	345.cel
61	14	S721 S722	1453.cel
62	40	S721 S722	300.cel
63	7	S721 S722	129.cel
64	34	S721 S722	269.cel
65	45	S721 S722	349.cel
66	47	S721 S722	360.cel
67	12	S722	1430.cel
68	15	S722	147.cel
69	5	S722	12.cel
70	37	S722	284.cel
71	48	S722	390.cel
72	74	S722	ge205.cel
73	62	S722	574.cel
74	63	S722	63.cel

Genes Names

1	34	218469_at	GREM1 Chr:15q13-q15
2	27	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	25	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	30	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	26	211836_s_at	MOG Chr:6p22-p21.3
6	44	228624_at	FLJ11155 Chr:4q32.1
7	13	204733_at	KLK6 Chr:19q13.3
8	36	219750_at	FLJ11155 Chr:4q32.1
9	32	217613_at	FLJ11155 Chr:4q32.1
10	33	218094_s_at	C20orf35 Chr:20q13.12
11	17	205989_s_at	MOG Chr:6p22-p21.3
12	41	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	42	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	37	220026_at	CLCA4 Chr:1p31-p22
17	19	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	21	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	29	213371_at	LDB3 Chr:10q22.3-q23.2
22	24	210657_s_at	PNUTL2 Chr:17q22-q23
23	23	210193_at	MOBP Chr:3p21.33
24	28	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	54	238498_at	--- ---
27	31	214650_x_at	MOG Chr:6p22-p21.3
28	14	204777_s_at	MAL Chr:2cen-q13
29	46	229781_at	--- ---
30	45	228891_at	LOC349236 Chr:9q22.2
31	60	242765_at	MOBP Chr:3p21.33
32	22	210169_at	KIAA0420 Chr:16p13.3
33	47	231911_at	KIAA1189 Chr:2q24.2
34	20	207659_s_at	MOBP Chr:3p21.33
35	57	241717_at	LOC285281 Chr:3p21.33
36	53	238008_at	MGC35308 Chr:6q27
37	40	223572_at	KIAA1173 Chr:3p21.33
38	48	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	51	235794_at	MOBP Chr:3p21.33
41	38	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	59	242002_at	TCBA1 Chr:6q21
45	11	204547_at	RAB40B Chr:17q25.3
46	39	222862_s_at	AK5 Chr:1p31
47	49	235342_at	SPOCK3 Chr:4q32.3
48	16	205814_at	GRM3 Chr:7q21.1-q21.2
49	52	236420_s_at	TMEM16D Chr:12q23.3
50	55	239575_at	TMEM10 Chr:10q23-q24
51	58	241833_at	--- ---
52	15	205637_s_at	SH3GL3 Chr:15q24
53	56	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	12	204681_s_at	RAPGEF5 Chr:7p15.3
57	35	219429_at	FA2H Chr:16q23
58	43	227006_at	PPP1R14A Chr:19q13.1
59	50	235476_at	TSBF1 Chr:3q26.1
60	18	207308_at	SLCO1A2 Chr:12p12

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 12:20:17

S6_using_G4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC