S6_using_G3

Super-paramagnetic Clustering of 74 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S717	1437.cel
2	4	S717	1076.cel
3	16	S717	148.cel
4	19	S717	1553.cel
5	25	S717	1780.cel
6	1	S715 S716	100R.cel
7	7	S713 S715 S716	129.cel
8	18	S713 S715 S716	15.cel
9	11	S709 S713 S715 S716	1399.cel
10	8	S709 S713 S715 S716	1308.cel
11	27	S709 S713 S715 S716	190.cel
12	44	S709 S713 S715 S716	345.cel
13	61	S709 S713 S715 S716	57.cel
14	34	S713 S715 S716	269.cel
15	5	S714 S716	12.cel
16	36	S712 S714 S716	283.cel
17	32	S710 S711 S712 S714 S716	246.cel
18	41	S710 S711 S712 S714 S716	323.cel
19	2	S708 S710 S711 S712 S714 S716	104.cel
20	20	S708 S710 S711 S712 S714 S716	155R.cel
21	12	S708 S710 S711 S712 S714 S716	1430.cel
22	23	S708 S710 S711 S712 S714 S716	1621.cel
23	6	S708 S710 S711 S712 S714 S716	1284.cel
24	24	S708 S710 S711 S712 S714 S716	1622R.cel
25	28	S708 S710 S711 S712 S714 S716	218.cel
26	29	S708 S710 S711 S712 S714 S716	222.cel
27	30	S708 S710 S711 S712 S714 S716	236.cel
28	31	S708 S710 S711 S712 S714 S716	242.cel
29	22	S708 S710 S711 S712 S714 S716	159.cel
30	46	S708 S710 S711 S712 S714 S716	356bis.cel
31	52	S708 S710 S711 S712 S714 S716	458.cel
32	67	S708 S710 S711 S712 S714 S716	83.cel
33	26	S708 S710 S711 S712 S714 S716	1854R.cel
34	9	S708 S710 S711 S712 S714 S716	1317.cel
35	49	S708 S710 S711 S712 S714 S716	396.cel
36	50	S708 S710 S711 S712 S714 S716	428.cel
37	39	S708 S710 S711 S712 S714 S716	30.cel
38	72	S708 S710 S711 S712 S714 S716	97.cel
39	33	S708 S710 S711 S712 S714 S716	254.cel
40	51	S708 S710 S711 S712 S714 S716	444.cel
41	53	S708 S710 S711 S712 S714 S716	461.cel
42	64	S708 S710 S711 S712 S714 S716	65R.cel
43	60	S708 S710 S711 S712 S714 S716	566.cel
44	3	S708 S710 S711 S712 S714 S716	106.cel
45	10	S708 S710 S711 S712 S714 S716	1360.cel
46	17	S708 S710 S711 S712 S714 S716	1497R.cel
47	15	S708 S710 S711 S712 S714 S716	147.cel
48	21	S708 S710 S711 S712 S714 S716	157.cel
49	45	S708 S710 S711 S712 S714 S716	349.cel
50	47	S708 S710 S711 S712 S714 S716	360.cel
51	71	S708 S710 S711 S712 S714 S716	94bis.cel
52	35	S708 S710 S711 S712 S714 S716	274.cel
53	69	S708 S710 S711 S712 S714 S716	90.cel
54	42	S708 S710 S711 S712 S714 S716	328.cel
55	43	S708 S710 S711 S712 S714 S716	344.cel
56	65	S708 S710 S711 S712 S714 S716	70.cel
57	55	S708 S710 S711 S712 S714 S716	527.cel
58	59	S708 S710 S711 S712 S714 S716	563.cel
59	68	S708 S710 S711 S712 S714 S716	84.cel
60	70	S708 S710 S711 S712 S714 S716	93.cel
61	63	S710 S711 S712 S714 S716	63.cel
62	66	S710 S711 S712 S714 S716	80.cel
63	54	S710 S711 S712 S714 S716	506.cel
64	57	S710 S711 S712 S714 S716	547.cel
65	14	S711 S712 S714 S716	1453.cel
66	37	S711 S712 S714 S716	284.cel
67	48	S711 S712 S714 S716	390.cel
68	58	S711 S712 S714 S716	558.cel
69	38	S711 S712 S714 S716	288.cel
70	74	S711 S712 S714 S716	ge205.cel
71	40	S711 S712 S714 S716	300.cel
72	73	S711 S712 S714 S716	ge197.cel
73	56	S716	528bis.cel
74	62	S716	574.cel

Genes Names

1	11	203798_s_at	VSNL1 Chr:2p24.3
2	50	228262_at	FLJ14503 Chr:xp22.13
3	22	206376_at	SLC6A15 Chr:12q21.3
4	49	227702_at	CYP4X1 Chr:1p33
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	67	243929_at	--- ---
7	39	219937_at	TRHDE Chr:12q15-q21
8	34	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	24	206678_at	GABRA1 Chr:5q34-q35
13	57	233002_at	KIAA1622 Chr:14q32.2
14	53	230137_at	FLJ30834 Chr:4q27
15	40	220030_at	STYK1 Chr:12p13.31
16	25	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	14	204081_at	NRGN Chr:11q24
20	30	213921_at	SST Chr:3q28
21	17	205113_at	NEF3 Chr:8p21
22	15	204229_at	SLC17A7 Chr:19q13
23	66	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	55	231489_x_at	--- ---
26	21	205827_at	CCK Chr:3p22-p21.3
27	68	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	45	224650_at	MAL2 Chr:8q23
31	13	203999_at	SYT1 Chr:12cen-q21
32	29	210247_at	SYN2 Chr:3p25
33	56	232426_at	--- ---
34	69	52837_at	KIAA1644 Chr:22q13
35	41	220359_s_at	ARPP-21 Chr:3p22.1
36	42	221217_s_at	A2BP1 Chr:16p13.3
37	12	203998_s_at	SYT1 Chr:12cen-q21
38	28	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	54	230551_at	--- ---
41	59	237384_x_at	--- ---
42	58	236456_at	PTPN5 Chr:11p15.1
43	65	241807_x_at	--- ---
44	19	205635_at	HAPIP Chr:3q21.2
45	31	214044_at	RYR2 Chr:1q42.1-q43
46	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	51	229039_at	SYN2 Chr:3p25
48	16	204546_at	KIAA0513 Chr:16q24.1
49	10	202507_s_at	SNAP25 Chr:20p12-p11.2
50	38	219671_at	HPCAL4 Chr:1p34.2
51	47	226086_at	SYT13 Chr:11p12-p11
52	18	205414_s_at	KIAA0672 Chr:17p12
53	37	219659_at	ATP8A2 Chr:13q12-13
54	27	210040_at	SLC12A5 Chr:20q13.12
55	63	241399_at	TAFA2 Chr:12q13.3-q14.1
56	46	225111_s_at	NAPB Chr:20p12.3-p11.21
57	62	239765_at	--- ---
58	48	227053_at	PACSIN1 Chr:6p21.3
59	35	214956_at	--- ---
60	60	239357_at	--- ---
61	32	214098_at	KIAA1107 Chr:1p22.1
62	33	214811_at	KIAA0318 Chr:12q24.33
63	44	224209_s_at	GDA Chr:9q21.11-21.33
64	20	205691_at	SYNGR3 Chr:16p13
65	26	209726_at	CA11 Chr:19q13.3
66	61	239579_at	ABHD7 Chr:1p22.1
67	43	224164_at	TPM3 Chr:1q21.2
68	52	229254_at	DKFZp761N1114 Chr:1q32.1
69	64	241672_at	LOC400120 Chr:13q13.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 12:00:59

S6_using_G3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC