S6_using_G28

Super-paramagnetic Clustering of 74 points in a 20 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	7				129.cel
2	37				284.cel
3	58				558.cel
4	4	S891 S893			1076.cel
5	1	S891 S893			100R.cel
6	13	S891 S893			1437.cel
7	71	S891 S893			94bis.cel
8	20	S891 S893			155R.cel
9	19	S891 S893			1553.cel
10	25	S891 S893			1780.cel
11	38	S891 S893			288.cel
12	26	S891 S893			1854R.cel
13	16	S891 S893			148.cel
14	30	S891 S893			236.cel
15	56	S891 S893			528bis.cel
16	43	S891 S893			344.cel
17	44	S891 S893			345.cel
18	10	S891 S893			1360.cel
19	61	S891 S893			57.cel
20	66	S891 S893			80.cel
21	69	S891 S893			90.cel
22	14	S891 S893			1453.cel
23	27	S891 S893			190.cel
24	31	S891 S893			242.cel
25	33	S891 S893			254.cel
26	36	S891 S893			283.cel
27	18	S891 S893			15.cel
28	48	S891 S893			390.cel
29	65	S891 S893			70.cel
30	54	S893			506.cel
31	55	S893			527.cel
32	28				218.cel
33	21				157.cel
34	11	S892			1399.cel
35	9	S892			1317.cel
36	22	S892			159.cel
37	40	S892			300.cel
38	32	S892			246.cel
39	8	S892			1308.cel
40	29	S892			222.cel
41	41	S892			323.cel
42	15	S892			147.cel
43	46	S892			356bis.cel
44	72	S892			97.cel
45	6	S892			1284.cel
46	49	S892			396.cel
47	24	S892			1622R.cel
48	64	S892			65R.cel
49	68	S892			84.cel
50	23	S892			1621.cel
51	42	S892			328.cel
52	17	S890 S892			1497R.cel
53	50	S890 S892			428.cel
54	59	S890 S892			563.cel
55	67	S890 S892			83.cel
56	70				93.cel
57	12				1430.cel
58	57				547.cel
59	74				ge205.cel
60	2				104.cel
61	5				12.cel
62	45				349.cel
63	62				574.cel
64	47				360.cel
65	63				63.cel
66	34				269.cel
67	3				106.cel
68	60				566.cel
69	73				ge197.cel
70	39				30.cel
71	51				444.cel
72	52				458.cel
73	35				274.cel
74	53				461.cel

Genes Names

1	2	204121_at		GADD45G Chr:9q22.1-q22.2
2	14	229400_at		HOXD10 Chr:2q31.1
3	18	238847_at		--- ---
4	5	206858_s_at		HOXC6 Chr:12q13.3
5	6	209905_at		HOXA9 Chr:7p15-p14
6	9	214651_s_at		HOXA9 Chr:7p15-p14
7	3	204362_at		SCAP2 Chr:7p21-p15
8	10	225639_at		SCAP2 Chr:7p21-p15
9	8	213844_at		HOXA5 Chr:7p15-p14
10	7	213150_at		HOXA10 Chr:7p15-p14
11	11	226582_at		--- Chr:12q13.13
12	1	1557051_s_at		--- ---
13	13	228642_at		--- ---
14	16	235521_at		HOXA3 Chr:7p15-p14
15	17	235753_at		--- ---
16	19	239153_at		--- Chr:12q13.13
17	12	228564_at		LOC375295 Chr:2q31.2
18	4	205522_at		HOXD4 Chr:2q31.1
19	15	231906_at		HOXD8 Chr:2q31.1
20	20	244521_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 21:35:25