S6_using_G27

Super-paramagnetic Clustering of 74 points in a 79 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	22	S887 S889	159.cel
2	9	S884 S887 S889	1317.cel
3	16	S884 S887 S889	148.cel
4	4	S884 S887 S889	1076.cel
5	19	S884 S887 S889	1553.cel
6	25	S884 S887 S889	1780.cel
7	7	S883 S884 S887 S889	129.cel
8	8	S883 S884 S887 S889	1308.cel
9	11	S883 S884 S887 S889	1399.cel
10	66	S883 S884 S887 S889	80.cel
11	18	S883 S884 S887 S889	15.cel
12	37	S884 S887 S889	284.cel
13	62	S884 S887 S889	574.cel
14	73	S884 S887 S889	ge197.cel
15	3	S884 S887 S889	106.cel
16	5	S884 S887 S889	12.cel
17	32	S884 S887 S889	246.cel
18	31	S884 S887 S889	242.cel
19	45	S884 S887 S889	349.cel
20	15	S884 S887 S889	147.cel
21	24	S884 S887 S889	1622R.cel
22	34	S884 S887 S889	269.cel
23	46	S884 S887 S889	356bis.cel
24	6	S884 S887 S889	1284.cel
25	28	S884 S887 S889	218.cel
26	35	S884 S887 S889	274.cel
27	21	S884 S887 S889	157.cel
28	52	S884 S887 S889	458.cel
29	69	S884 S887 S889	90.cel
30	67	S884 S887 S889	83.cel
31	71	S884 S887 S889	94bis.cel
32	39	S884 S887 S889	30.cel
33	33	S884 S887 S889	254.cel
34	20	S884 S887 S889	155R.cel
35	47	S884 S887 S889	360.cel
36	41	S884 S887 S889	323.cel
37	60	S884 S887 S889	566.cel
38	68	S884 S887 S889	84.cel
39	29	S884 S887 S889	222.cel
40	49	S884 S887 S889	396.cel
41	72	S884 S887 S889	97.cel
42	50	S884 S887 S889	428.cel
43	12	S884 S887 S889	1430.cel
44	59	S884 S887 S889	563.cel
45	43	S884 S887 S889	344.cel
46	61	S884 S887 S889	57.cel
47	65	S884 S887 S889	70.cel
48	17	S884 S887 S889	1497R.cel
49	54	S884 S887 S889	506.cel
50	42	S887 S889	328.cel
51	40	S887 S889	300.cel
52	23	S887 S889	1621.cel
53	36	S887 S889	283.cel
54	44	S887 S889	345.cel
55	48	S887 S889	390.cel
56	56	S885 S889	528bis.cel
57	26	S885 S889	1854R.cel
58	57	S885 S889	547.cel
59	63	S885 S889	63.cel
60	2		104.cel
61	10		1360.cel
62	14	S888	1453.cel
63	13	S888	1437.cel
64	51	S888	444.cel
65	74	S888	ge205.cel
66	1	S888	100R.cel
67	27	S888	190.cel
68	53	S888	461.cel
69	55	S888	527.cel
70	30	S886 S888	236.cel
71	38	S886 S888	288.cel
72	58	S886 S888	558.cel
73	64	S886 S888	65R.cel
74	70	S886 S888	93.cel

Genes Names

1	12	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	48	230763_at	LOC128153 Chr:1q41
4	46	229816_at	FLJ23129 Chr:1p31.3
5	40	228100_at	LOC128344 Chr:1p13.2
6	32	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	26	220302_at	MAK Chr:6q22
9	59	235946_at	FLJ32783 Chr:Xp11.23
10	38	227091_at	KIAA1505 Chr:7p12.3
11	50	231077_at	MGC20470 Chr:11p15.4
12	27	220390_at	FLJ23598 Chr:11p11.2
13	28	220591_s_at	FLJ22843 Chr:xp11.4
14	13	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	60	236222_at	AAT1 Chr:3q12-q13.3
17	55	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	18	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	76	243087_at	NYD-SP29 Chr:1p22.3
21	14	205714_s_at	ZMYND10 Chr:3p21.3
22	57	233516_s_at	PF6 Chr:1p12
23	73	240857_at	DNAH9 Chr:17p12
24	63	236909_at	LOC129881 Chr:2q31.1
25	54	231549_at	MGC35194 Chr:1p36.21
26	62	236717_at	LOC165186 Chr:2p23.3
27	72	240065_at	FLJ25333 Chr:5q15
28	66	237281_at	AKAP28 Chr:xq25
29	51	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	43	229169_at	TTC18 Chr:10q22.3
32	78	243802_at	FLJ40427 Chr:3p21.2
33	24	220168_at	CASC1 Chr:12p12.1
34	71	239916_at	LOC146845 Chr:17p13.1
35	29	220636_at	DNAI2 Chr:17q25
36	74	241310_at	--- ---
37	65	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	67	238116_at	DNCL2B Chr:16q23.3
39	70	239776_at	--- Chr:5q22.1
40	47	230093_at	TSGA2 Chr:21q22.3
41	25	220269_at	FLJ23049 Chr:3q26.2
42	15	206197_at	NME5 Chr:5q31
43	61	236325_at	--- ---
44	42	229012_at	C9orf24 Chr:9p13.2
45	33	224463_s_at	MGC13040 Chr:11q22.2
46	68	238327_at	ECGF1 Chr:22q13.33
47	75	241470_x_at	--- ---
48	58	235658_at	--- ---
49	9	202587_s_at	AK1 Chr:9q34.1
50	44	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	20	218876_at	CGI-38 Chr:16q22.1
53	30	222890_at	HSPC065 Chr:16q13
54	22	219703_at	MNS1 Chr:15q21.2
55	36	226872_at	RFX2 Chr:19p13.3-p13.2
56	79	64900_at	CHST5 Chr:16q22.3
57	56	232984_at	HYDIN Chr:16q22.2
58	37	227081_at	DNALI1 Chr:1p35.1
59	52	231319_x_at	KIF9 Chr:3p21.31
60	19	210117_at	SPAG1 Chr:8q22.2
61	10	203397_s_at	GALNT3 Chr:2q24-q31
62	69	238584_at	FLJ22527 Chr:2q37.3
63	41	228450_at	LOC144100 Chr:11p15.2-p15.1
64	49	231068_at	FLJ31196 Chr:17p11.2
65	16	207624_s_at	RPGR Chr:xp11.4
66	45	229331_at	LOC132671 Chr:4q12
67	53	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13
69	23	219833_s_at	EFHC1 Chr:6p12.3
70	34	225656_at	EFHC1 Chr:6p12.3
71	39	227105_at	FLJ22490 Chr:8q13.1
72	64	236915_at	--- ---
73	21	219229_at	SLCO3A1 Chr:15q26
74	31	223642_at	ZIC2 Chr:13q32
75	8	1562921_at	--- Chr:22q13.2
76	17	207797_s_at	DKFZp761O0113 Chr:4q35.1
77	77	243198_at	LOC161577 Chr:15q21.2
78	11	204187_at	GMPR Chr:6p23
79	35	226558_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 21:10:35

S6_using_G27

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC