S6_using_G26

Super-paramagnetic Clustering of 74 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S876	15.cel
2	25	S876	1780.cel
3	16	S876	148.cel
4	4	S876	1076.cel
5	19	S876	1553.cel
6	36	S876	283.cel
7	32	S875	246.cel
8	38	S875	288.cel
9	41	S875	323.cel
10	64	S875	65R.cel
11	21	S874	157.cel
12	52	S874	458.cel
13	67	S874	83.cel
14	69	S874	90.cel
15	72	S873 S877	97.cel
16	63	S873 S877	63.cel
17	73	S873 S877	ge197.cel
18	49	S873 S877	396.cel
19	40	S873 S877	300.cel
20	35	S873 S877	274.cel
21	47	S873 S877	360.cel
22	24	S877	1622R.cel
23	28	S877	218.cel
24	61	S872 S877	57.cel
25	14	S872 S877	1453.cel
26	50	S872 S877	428.cel
27	54	S872 S877	506.cel
28	20		155R.cel
29	68		84.cel
30	60		566.cel
31	42		328.cel
32	51		444.cel
33	48		390.cel
34	1		100R.cel
35	65		70.cel
36	6		1284.cel
37	34		269.cel
38	5	S878	12.cel
39	26	S878	1854R.cel
40	62	S878	574.cel
41	39	S878	30.cel
42	43	S881	344.cel
43	57	S881	547.cel
44	17	S881	1497R.cel
45	11	S881	1399.cel
46	74	S881	ge205.cel
47	46	S882	356bis.cel
48	9	S882	1317.cel
49	71	S880 S882	94bis.cel
50	2	S880 S882	104.cel
51	12	S880 S882	1430.cel
52	22	S880 S882	159.cel
53	30	S882	236.cel
54	15	S882	147.cel
55	3	S882	106.cel
56	37	S882	284.cel
57	7	S882	129.cel
58	45	S882	349.cel
59	53	S871 S879	461.cel
60	10	S871 S879	1360.cel
61	55	S871 S879	527.cel
62	29	S871 S879	222.cel
63	8	S871 S879	1308.cel
64	27	S871 S879	190.cel
65	66	S871 S879	80.cel
66	70	S879	93.cel
67	31		242.cel
68	59		563.cel
69	23		1621.cel
70	13		1437.cel
71	33		254.cel
72	58		558.cel
73	44		345.cel
74	56		528bis.cel

Genes Names

1	29	204825_at	MELK Chr:9p13.1
2	21	204162_at	KNTC2 Chr:18p11.31
3	5	202503_s_at	KIAA0101 Chr:15q22.1
4	43	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	52	218039_at	NUSAP1 Chr:15q14
7	70	222848_at	FKSG14 Chr:5p15.2-q12.3
8	55	218662_s_at	HCAP-G Chr:4p16-p15
9	15	203755_at	BUB1B Chr:15q15
10	49	214710_s_at	CCNB1 Chr:5q12
11	18	204026_s_at	ZWINT Chr:10q21-q22
12	10	203213_at	CDC2 Chr:10q21.1
13	24	204244_s_at	ASK Chr:7q21.3
14	39	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	44	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	8	202705_at	CCNB2 Chr:15q21.3
19	57	218755_at	KIF20A Chr:5q31
20	11	203358_s_at	EZH2 Chr:7q35-q36
21	16	203764_at	DLG7 Chr:14q22.2
22	60	219148_at	TOPK Chr:8p21.2
23	9	202870_s_at	CDC20 Chr:1p34.1
24	80	228273_at	FLJ11029 Chr:17q23.2
25	56	218663_at	HCAP-G Chr:4p16-p15
26	62	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	82	228729_at	CCNB1 Chr:5q12
28	13	203554_x_at	PTTG1 Chr:5q35.1
29	20	204146_at	PIR51 Chr:12p13.2-p13.1
30	53	218355_at	KIF4A Chr:xq13.1
31	30	204962_s_at	CENPA Chr:2p24-p21
32	59	218883_s_at	KLIP1 Chr:4q35.1
33	51	218009_s_at	PRC1 Chr:15q26.1
34	45	210559_s_at	CDC2 Chr:10q21.1
35	38	207828_s_at	CENPF Chr:1q32-q41
36	42	209642_at	BUB1 Chr:2q14
37	68	222740_at	ATAD2 Chr:8q24.13
38	72	223381_at	CDCA1 Chr:1q23.2
39	61	219306_at	KNSL7 Chr:3p21.32
40	47	213226_at	PMSCL1 Chr:4q27
41	63	219918_s_at	ASPM Chr:1q31
42	86	230165_at	SGOL2 Chr:2q33.2
43	25	204444_at	KIF11 Chr:10q24.1
44	32	205046_at	CENPE Chr:4q24-q25
45	12	203362_s_at	MAD2L1 Chr:4q27
46	46	213007_at	FLJ10719 Chr:15q25-q26
47	89	236641_at	KIF14 Chr:1pter-q31.3
48	28	204822_at	TTK Chr:6q13-q21
49	41	209172_s_at	CENPF Chr:1q32-q41
50	81	228323_at	AF15Q14 Chr:15q14
51	76	226980_at	XTP1 Chr:5q12.1
52	66	222077_s_at	RACGAP1 Chr:12q13.12
53	54	218585_s_at	RAMP Chr:1q32.1-q32.2
54	67	222680_s_at	RAMP Chr:1q32.1-q32.2
55	27	204641_at	NEK2 Chr:1q32.2-q41
56	90	238756_at	LOC283431 Chr:12q23.3
57	73	224428_s_at	CDCA7 Chr:2q31
58	7	202589_at	TYMS Chr:18p11.32
59	71	223229_at	HSPC150 Chr:1q32.1
60	6	202580_x_at	FOXM1 Chr:12p13
61	22	204170_s_at	CKS2 Chr:9q22
62	58	218875_s_at	FBXO5 Chr:6q25-q26
63	65	222039_at	LOC146909 Chr:17q21.31
64	74	225834_at	MGC57827 ---
65	77	227249_at	NDE1 Chr:16p13.11
66	91	242560_at	FANCD2 Chr:3p26
67	35	206102_at	KIAA0186 Chr:20p11.21
68	19	204033_at	TRIP13 Chr:5p15.33
69	40	208808_s_at	HMGB2 Chr:4q31
70	79	228033_at	E2F7 Chr:12q21.1
71	37	207165_at	HMMR Chr:5q33.2-qter
72	84	229490_s_at	IQGAP3 Chr:1q23.1
73	88	235425_at	SGOL2 Chr:2q33.2
74	50	216237_s_at	MCM5 Chr:22q13.1
75	14	203560_at	GGH Chr:8q12.2
76	23	204240_s_at	SMC2L1 Chr:9q31.2
77	36	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	64	220239_at	KLHL7 Chr:7p15.3
79	48	213906_at	MYBL1 Chr:8q22
80	26	204510_at	CDC7 Chr:1p22
81	78	227350_at	--- ---
82	34	205967_at	HIST1H4C Chr:6p21.3
83	33	205394_at	CHEK1 Chr:11q24-q24
84	83	229305_at	KLIP1 Chr:4q35.1
85	4	202107_s_at	MCM2 Chr:3q21
86	17	204023_at	RFC4 Chr:3q27
87	69	222843_at	FIGNL1 Chr:7p12.2
88	31	205034_at	CCNE2 Chr:8q22.1
89	85	229551_x_at	ZNF367 Chr:9q22
90	87	232315_at	LOC400713 Chr:19q13.41
91	75	226319_s_at	THOC4 Chr:17q25.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 20:44:26

S6_using_G26

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC