S6_using_G25

Super-paramagnetic Clustering of 74 points in a 18 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	65	S865 S868			70.cel
2	9	S865 S868			1317.cel
3	16	S857 S865 S868			148.cel
4	4	S857 S865 S868			1076.cel
5	73	S857 S865 S868			ge197.cel
6	11	S857 S865 S868			1399.cel
7	61	S857 S865 S868			57.cel
8	19	S857 S865 S868			1553.cel
9	20	S857 S865 S868			155R.cel
10	25	S857 S865 S868			1780.cel
11	63	S857 S865 S868			63.cel
12	68	S857 S865 S868			84.cel
13	2	S868			104.cel
14	57				547.cel
15	60				566.cel
16	18	S869			15.cel
17	37	S869			284.cel
18	66	S869			80.cel
19	48	S869			390.cel
20	21	S869			157.cel
21	23	S861 S869			1621.cel
22	24	S861 S869			1622R.cel
23	55	S861 S869			527.cel
24	51	S861 S869			444.cel
25	31	S869			242.cel
26	15	S862 S869			147.cel
27	34	S862 S869			269.cel
28	8	S862 S869			1308.cel
29	28	S862 S869			218.cel
30	13	S859 S862 S869			1437.cel
31	22	S859 S862 S869			159.cel
32	39	S859 S862 S869			30.cel
33	74	S859 S862 S869			ge205.cel
34	46	S859 S862 S869			356bis.cel
35	49	S869			396.cel
36	72	S869			97.cel
37	10	S870			1360.cel
38	5	S870			12.cel
39	59	S870			563.cel
40	30	S870			236.cel
41	56	S870			528bis.cel
42	36	S870			283.cel
43	32	S870			246.cel
44	33	S864 S870			254.cel
45	3	S864 S870			106.cel
46	47	S864 S870			360.cel
47	67	S864 S870			83.cel
48	14	S870			1453.cel
49	53	S870			461.cel
50	58	S863 S870			558.cel
51	7	S858 S863 S870			129.cel
52	43	S858 S863 S870			344.cel
53	62	S858 S863 S870			574.cel
54	70	S858 S863 S870			93.cel
55	26	S867			1854R.cel
56	42	S867			328.cel
57	17	S867			1497R.cel
58	38	S867			288.cel
59	27	S860 S867			190.cel
60	52	S860 S867			458.cel
61	54	S860 S867			506.cel
62	71	S860 S867			94bis.cel
63	35	S867			274.cel
64	64	S867			65R.cel
65	12	S867			1430.cel
66	40	S867			300.cel
67	50	S867			428.cel
68	29	S866 S867			222.cel
69	6	S866 S867			1284.cel
70	69	S866 S867			90.cel
71	41	S866 S867			323.cel
72	45				349.cel
73	1				100R.cel
74	44				345.cel

Genes Names

1	5	209692_at		EYA2 Chr:20q13.1
2	2	201984_s_at		EGFR Chr:7p12
3	4	203484_at		SEC61G Chr:7p11.2
4	8	228307_at		EMILIN3 Chr:20q11.2-q12
5	9	232120_at		--- ---
6	14	232925_at		--- ---
7	16	233025_at		PDZK3 Chr:5p13.3
8	18	243327_at		--- ---
9	1	201983_s_at		EGFR Chr:7p12
10	7	224999_at		--- ---
11	10	232224_at		MASP1 Chr:3q27-q28
12	6	210135_s_at		SHOX2 Chr:3q25-q26.1
13	12	232541_at		--- ---
14	17	233044_at		--- ---
15	15	232935_at		--- ---
16	13	232882_at		--- ---
17	3	203373_at		SOCS2 Chr:12q
18	11	232539_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 20:17:17