S6_using_G24

Super-paramagnetic Clustering of 74 points in a 134 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	20	S856	155R.cel
2	2	S854 S856	104.cel
3	28	S854 S856	218.cel
4	21	S854 S856	157.cel
5	25	S854 S856	1780.cel
6	31	S854 S856	242.cel
7	5	S854 S856	12.cel
8	3	S854 S856	106.cel
9	6	S854 S856	1284.cel
10	15	S854 S856	147.cel
11	11	S854 S856	1399.cel
12	16	S854 S856	148.cel
13	61	S854 S856	57.cel
14	14	S854 S856	1453.cel
15	71	S854 S856	94bis.cel
16	12	S854 S856	1430.cel
17	23	S854 S856	1621.cel
18	53	S854 S856	461.cel
19	32	S854 S856	246.cel
20	46	S854 S856	356bis.cel
21	24	S854 S856	1622R.cel
22	54	S854 S856	506.cel
23	57	S854 S856	547.cel
24	17	S854 S856	1497R.cel
25	26	S854 S856	1854R.cel
26	49	S854 S856	396.cel
27	9	S854 S856	1317.cel
28	13	S854 S856	1437.cel
29	22	S854 S856	159.cel
30	48	S854 S856	390.cel
31	7	S854 S856	129.cel
32	8	S854 S856	1308.cel
33	4	S854 S856	1076.cel
34	18	S854 S856	15.cel
35	19	S854 S856	1553.cel
36	44	S854 S856	345.cel
37	34	S854 S856	269.cel
38	45	S854 S856	349.cel
39	27	S854 S856	190.cel
40	66	S854 S856	80.cel
41	39	S854 S856	30.cel
42	36	S854 S856	283.cel
43	70	S854 S856	93.cel
44	40	S854 S856	300.cel
45	51	S854 S856	444.cel
46	42	S854 S856	328.cel
47	37	S854 S856	284.cel
48	52	S854 S856	458.cel
49	55	S854 S856	527.cel
50	29	S854 S856	222.cel
51	59	S854 S856	563.cel
52	62	S854 S856	574.cel
53	69	S854 S856	90.cel
54	67	S854 S856	83.cel
55	58	S854 S856	558.cel
56	1	S854 S856	100R.cel
57	63	S854 S856	63.cel
58	74	S854 S856	ge205.cel
59	72	S854 S856	97.cel
60	43	S854 S856	344.cel
61	35	S854 S856	274.cel
62	47	S854 S856	360.cel
63	30	S854 S856	236.cel
64	10	S854 S856	1360.cel
65	56	S854 S856	528bis.cel
66	64	S854 S856	65R.cel
67	50	S854 S856	428.cel
68	60	S854 S856	566.cel
69	65	S854 S856	70.cel
70	41	S856	323.cel
71	33	S855	254.cel
72	38	S855	288.cel
73	68	S855	84.cel
74	73	S855	ge197.cel

Genes Names

1	93	218854_at	SART2 Chr:6q22
2	28	203561_at	FCGR2A Chr:1q23
3	88	217388_s_at	KYNU Chr:2q22.3
4	14	201743_at	CD14 Chr:5q31.1
5	69	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	56	206584_at	LY96 Chr:8q13.3
8	46	204971_at	CSTA Chr:3q21
9	95	219607_s_at	MS4A4A Chr:11q12
10	15	202546_at	VAMP8 Chr:2p12-p11.2
11	106	223280_x_at	MS4A6A Chr:11q12.1
12	110	224356_x_at	MS4A6A Chr:11q12.1
13	17	202833_s_at	SERPINA1 Chr:14q32.1
14	35	204174_at	ALOX5AP Chr:13q12
15	127	230550_at	MS4A6A Chr:11q12.1
16	94	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	96	219666_at	MS4A6A Chr:11q12.1
19	36	204232_at	FCER1G Chr:1q23
20	66	210176_at	TLR1 Chr:4p14
21	83	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	16	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	21	202953_at	C1QB Chr:1p36.3-p34.1
26	92	218232_at	C1QA Chr:1p36.3-p34.1
27	80	213566_at	RNASE6 Chr:14q11.2
28	111	225353_s_at	C1QG Chr:1p36.11
29	76	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	45	204959_at	MNDA Chr:1q22
32	32	204007_at	FCGR3A Chr:1q23
33	13	201721_s_at	LAPTM5 Chr:1p34
34	43	204787_at	Z39IG Chr:xq12-q13.3
35	33	204122_at	TYROBP Chr:19q13.1
36	18	202901_x_at	CTSS Chr:1q21
37	54	206111_at	RNASE2 Chr:14q24-q31
38	120	228532_at	MGC24133 Chr:1p13.2
39	81	214467_at	GPR65 Chr:14q31-q32.1
40	31	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	58	208018_s_at	HCK Chr:20q11-q12
43	129	232617_at	CTSS Chr:1q21
44	22	202957_at	HCLS1 Chr:3q13
45	19	202902_s_at	CTSS Chr:1q21
46	40	204446_s_at	ALOX5 Chr:10q11.2
47	122	229560_at	TLR8 Chr:xp22
48	50	205786_s_at	ITGAM Chr:16p11.2
49	100	220330_s_at	SAMSN1 Chr:21q11
50	117	227266_s_at	FYB Chr:5p13.1
51	105	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	26	203416_at	CD53 Chr:1p13
53	124	229937_x_at	LILRB1 Chr:19q13.4
54	87	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	67	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	115	226068_at	SYK Chr:9q22
58	112	225502_at	DOCK8 Chr:9p24.3
59	91	217983_s_at	RNASET2 Chr:6q27
60	23	203104_at	CSF1R Chr:5q33-q35
61	130	232843_s_at	DOCK8 Chr:9p24.3
62	82	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	118	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	89	217478_s_at	HLA-DMA Chr:6p21.3
65	63	209312_x_at	HLA-DRB1 Chr:6p21.3
66	68	210982_s_at	HLA-DRA Chr:6p21.3
67	85	215193_x_at	HLA-DRB3 Chr:6p21.3
68	60	208306_x_at	HLA-DRB3 Chr:6p21.3
69	61	208894_at	HLA-DRA Chr:6p21.3
70	42	204670_x_at	HLA-DRB3 Chr:6p21.3
71	64	209619_at	CD74 Chr:5q32
72	78	212998_x_at	HLA-DQB1 Chr:6p21.3
73	70	211654_x_at	HLA-DQB1 Chr:6p21.3
74	74	211991_s_at	HLA-DPA1 Chr:6p21.3
75	107	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	71	211656_x_at	HLA-DQB1 Chr:6p21.3
78	65	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	79	213537_at	HLA-DPA1 Chr:6p21.3
81	77	212671_s_at	HLA-DQA1 Chr:6p21.3
82	116	227265_at	--- ---
83	73	211990_at	HLA-DPA1 Chr:6p21.3
84	126	230391_at	--- ---
85	99	220146_at	TLR7 Chr:xp22.3
86	53	205997_at	ADAM28 Chr:8p21.2
87	108	223620_at	GPR34 Chr:xp11.4-p11.3
88	72	211742_s_at	EVI2B Chr:17q11.2
89	123	229723_at	TAGAP Chr:6q25.3
90	34	204150_at	STAB1 Chr:3p21.31
91	134	38487_at	STAB1 Chr:3p21.31
92	125	230252_at	GPR92 Chr:12p13.31
93	55	206420_at	IGSF6 Chr:16p12-p13
94	128	230925_at	APBB1IP Chr:10p12.2
95	29	203645_s_at	CD163 Chr:12p13.3
96	84	215049_x_at	CD163 Chr:12p13.3
97	103	221210_s_at	NPL Chr:1q25
98	25	203305_at	F13A1 Chr:6p25.3-p24.3
99	113	225646_at	CTSC Chr:11q14.1-q14.3
100	114	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	38	204430_s_at	SLC2A5 Chr:1p36.2
103	57	207655_s_at	BLNK Chr:10q23.2-q23.33
104	86	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	44	204834_at	FGL2 Chr:7q11.23
107	90	217767_at	C3 Chr:19p13.3-p13.2
108	102	220532_s_at	LR8 Chr:7q36.1
109	20	202917_s_at	S100A8 Chr:1q21
110	27	203535_at	S100A9 Chr:1q21
111	101	220491_at	HAMP Chr:19q13.1
112	48	205119_s_at	FPR1 Chr:19q13.4
113	109	223660_at	AD026 Chr:1p13.2
114	75	212543_at	AIM1 Chr:6q21
115	98	220005_at	GPR86 Chr:3q24
116	52	205898_at	CX3CR1 Chr:3p21.3
117	119	227889_at	CAPNS2 Chr:16q13
118	37	204416_x_at	APOC1 Chr:19q13.2
119	51	205890_s_at	UBD Chr:6p21.3
120	59	208146_s_at	CPVL Chr:7p15-p14
121	30	203665_at	HMOX1 Chr:22q13.1
122	132	236028_at	IBSP Chr:4q21-q25
123	133	244434_at	--- ---
124	41	204563_at	SELL Chr:1q23-q25
125	39	204438_at	MRC1 Chr:10p13
126	97	219890_at	CLECSF5 Chr:7q33
127	131	234987_at	--- Chr:20q11.23
128	47	205027_s_at	MAP3K8 Chr:10p12.1
129	62	208944_at	TGFBR2 Chr:3p22
130	12	201631_s_at	IER3 Chr:6p21.3
131	49	205681_at	BCL2A1 Chr:15q24.3
132	24	203290_at	HLA-DQA1 Chr:6p21.3
133	104	221491_x_at	HLA-DRB3 Chr:6p21.3
134	121	229074_at	EHD4 Chr:15q11.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 19:44:23

S6_using_G24

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC