S6_using_G23

Super-paramagnetic Clustering of 74 points in a 110 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S850 S852	148.cel
2	19	S850 S852	1553.cel
3	4	S850 S852	1076.cel
4	25	S850 S852	1780.cel
5	50	S852	428.cel
6	66	S852	80.cel
7	18	S852	15.cel
8	70	S852	93.cel
9	3	S851 S853	106.cel
10	13	S849 S851 S853	1437.cel
11	7	S849 S851 S853	129.cel
12	10	S849 S851 S853	1360.cel
13	8	S849 S851 S853	1308.cel
14	27	S849 S851 S853	190.cel
15	20	S849 S851 S853	155R.cel
16	33	S849 S851 S853	254.cel
17	65	S849 S851 S853	70.cel
18	11	S849 S851 S853	1399.cel
19	1	S849 S851 S853	100R.cel
20	38	S849 S851 S853	288.cel
21	61	S849 S851 S853	57.cel
22	36	S849 S851 S853	283.cel
23	14	S849 S851 S853	1453.cel
24	34	S849 S851 S853	269.cel
25	37	S849 S851 S853	284.cel
26	44	S849 S851 S853	345.cel
27	5	S849 S851 S853	12.cel
28	62	S849 S851 S853	574.cel
29	67	S849 S851 S853	83.cel
30	48	S849 S851 S853	390.cel
31	74	S849 S851 S853	ge205.cel
32	12	S849 S851 S853	1430.cel
33	40	S849 S851 S853	300.cel
34	47	S849 S851 S853	360.cel
35	45	S849 S851 S853	349.cel
36	56	S849 S851 S853	528bis.cel
37	9	S847 S848 S851 S853	1317.cel
38	28	S847 S848 S851 S853	218.cel
39	24	S847 S848 S851 S853	1622R.cel
40	31	S847 S848 S851 S853	242.cel
41	26	S847 S848 S851 S853	1854R.cel
42	32	S847 S848 S851 S853	246.cel
43	41	S847 S848 S851 S853	323.cel
44	69	S847 S848 S851 S853	90.cel
45	43	S847 S848 S851 S853	344.cel
46	71	S847 S848 S851 S853	94bis.cel
47	55	S847 S848 S851 S853	527.cel
48	58	S847 S848 S851 S853	558.cel
49	23	S847 S848 S851 S853	1621.cel
50	29	S847 S848 S851 S853	222.cel
51	30	S847 S848 S851 S853	236.cel
52	6	S847 S848 S851 S853	1284.cel
53	15	S847 S848 S851 S853	147.cel
54	35	S847 S848 S851 S853	274.cel
55	22	S847 S848 S851 S853	159.cel
56	21	S847 S848 S851 S853	157.cel
57	39	S847 S848 S851 S853	30.cel
58	42	S847 S848 S851 S853	328.cel
59	52	S847 S848 S851 S853	458.cel
60	54	S847 S848 S851 S853	506.cel
61	46	S847 S848 S851 S853	356bis.cel
62	49	S847 S848 S851 S853	396.cel
63	51	S847 S848 S851 S853	444.cel
64	60	S847 S848 S851 S853	566.cel
65	17	S847 S848 S851 S853	1497R.cel
66	72	S847 S848 S851 S853	97.cel
67	73	S847 S848 S851 S853	ge197.cel
68	64	S847 S848 S851 S853	65R.cel
69	68	S847 S848 S851 S853	84.cel
70	57	S847 S848 S851 S853	547.cel
71	59	S848 S851 S853	563.cel
72	63	S851 S853	63.cel
73	2	S853	104.cel
74	53	S853	461.cel

Genes Names

1	55	218469_at	GREM1 Chr:15q13-q15
2	41	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	39	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	49	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	40	211836_s_at	MOG Chr:6p22-p21.3
6	76	228624_at	FLJ11155 Chr:4q32.1
7	21	204733_at	KLK6 Chr:19q13.3
8	59	219750_at	FLJ11155 Chr:4q32.1
9	53	217613_at	FLJ11155 Chr:4q32.1
10	54	218094_s_at	C20orf35 Chr:20q13.12
11	25	205989_s_at	MOG Chr:6p22-p21.3
12	64	223699_at	CNDP1 Chr:18q22.3
13	8	1562608_at	--- ---
14	69	225822_at	MGC17299 Chr:1p34.1
15	13	204073_s_at	C11orf9 Chr:11q12-q13.1
16	60	220026_at	CLCA4 Chr:1p31-p22
17	29	207323_s_at	MBP Chr:18q23
18	14	204378_at	BCAS1 Chr:20q13.2-q13.3
19	33	209072_at	MBP Chr:18q23
20	4	1555807_a_at	MOG Chr:6p22-p21.3
21	46	213371_at	LDB3 Chr:10q22.3-q23.2
22	38	210657_s_at	PNUTL2 Chr:17q22-q23
23	37	210193_at	MOBP Chr:3p21.33
24	44	212829_at	--- ---
25	9	1565809_x_at	--- Chr:1p36.33
26	97	238498_at	--- ---
27	50	214650_x_at	MOG Chr:6p22-p21.3
28	22	204777_s_at	MAL Chr:2cen-q13
29	81	229781_at	--- ---
30	77	228891_at	LOC349236 Chr:9q22.2
31	107	242765_at	MOBP Chr:3p21.33
32	36	210169_at	KIAA0420 Chr:16p13.3
33	86	231911_at	KIAA1189 Chr:2q24.2
34	30	207659_s_at	MOBP Chr:3p21.33
35	103	241717_at	LOC285281 Chr:3p21.33
36	96	238008_at	MGC35308 Chr:6q27
37	63	223572_at	KIAA1173 Chr:3p21.33
38	87	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	92	235794_at	MOBP Chr:3p21.33
41	61	221868_at	KIAA1155 Chr:2p13.2
42	6	1557943_at	CNP Chr:17q21
43	5	1557481_a_at	--- ---
44	106	242002_at	TCBA1 Chr:6q21
45	17	204547_at	RAB40B Chr:17q25.3
46	62	222862_s_at	AK5 Chr:1p31
47	90	235342_at	SPOCK3 Chr:4q32.3
48	24	205814_at	GRM3 Chr:7q21.1-q21.2
49	93	236420_s_at	TMEM16D Chr:12q23.3
50	99	239575_at	TMEM10 Chr:10q23-q24
51	104	241833_at	--- ---
52	23	205637_s_at	SH3GL3 Chr:15q24
53	100	240053_x_at	--- ---
54	7	1562473_at	--- ---
55	10	202890_at	MAP7 Chr:6q23.2
56	20	204681_s_at	RAPGEF5 Chr:7p15.3
57	58	219429_at	FA2H Chr:16q23
58	71	227006_at	PPP1R14A Chr:19q13.1
59	91	235476_at	TSBF1 Chr:3q26.1
60	28	207308_at	SLCO1A2 Chr:12p12
61	43	212750_at	PPP1R16B Chr:20q12
62	57	219305_x_at	FBXO2 Chr:1p36.21
63	109	41577_at	PPP1R16B Chr:20q12
64	108	244113_at	--- ---
65	51	214769_at	CLCN4 Chr:Xp22.3
66	56	218651_s_at	FLJ11196 Chr:15q22.32
67	65	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	105	241873_at	UNC5C Chr:4q21-q23
69	70	226018_at	Ells1 Chr:7p15.1
70	73	227440_at	EB-1 Chr:12q23.1-q23.2
71	83	230104_s_at	p25 Chr:5p15.3
72	101	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	72	227439_at	EB-1 Chr:12q23.1-q23.2
74	74	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	88	234261_at	--- ---
76	95	236838_at	--- ---
77	15	204467_s_at	SNCA Chr:4q21
78	68	225727_at	PLEKHH1 Chr:14q24.1
79	89	235236_at	--- ---
80	48	213839_at	KIAA0500 Chr:14q32.2
81	16	204519_s_at	TM4SF11 Chr:16q13
82	26	206385_s_at	ANK3 Chr:10q21
83	34	209442_x_at	ANK3 Chr:10q21
84	52	215314_at	ANK3 Chr:10q21
85	32	208912_s_at	CNP Chr:17q21
86	67	225726_s_at	PLEKHH1 Chr:14q24.1
87	80	229713_at	--- ---
88	94	236565_s_at	FLJ11196 Chr:15q22.32
89	2	1553796_at	FLJ30594 Chr:2p25.3
90	3	1553797_a_at	FLJ30594 Chr:2p25.3
91	45	213106_at	ATP8A1 Chr:4p14-p12
92	85	231484_at	ATP8A1 Chr:4p14-p12
93	11	203151_at	MAP1A Chr:15q13-qter
94	18	204678_s_at	KCNK1 Chr:1q42-q43
95	35	209791_at	PADI2 Chr:1p35.2-p35.1
96	42	212339_at	EPB41L1 Chr:20q11.2-q12
97	12	203619_s_at	FAIM2 Chr:12q13
98	66	225325_at	FLJ20160 Chr:2q32.3
99	82	229958_at	--- Chr:8p23.3
100	84	230783_at	LOC283713 Chr:15q13.1
101	102	240512_x_at	KCTD4 Chr:13q14.11
102	27	206448_at	ZNF365 Chr:10q21.2
103	47	213385_at	CHN2 Chr:7p15.3
104	78	228973_at	FLJ37266 Chr:11q14.1
105	79	229110_at	--- ---
106	31	208358_s_at	UGT8 Chr:4q26
107	75	228010_at	PPP2R2C Chr:4p16.1
108	98	238600_at	MARLIN1 Chr:4p16.2
109	19	204679_at	KCNK1 Chr:1q42-q43
110	110	43511_s_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 19:20:56

S6_using_G23

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC