S6_using_G22

Super-paramagnetic Clustering of 74 points in a 34 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4	S843			1076.cel
2	13	S843			1437.cel
3	16	S843			148.cel
4	19	S843			1553.cel
5	25	S843			1780.cel
6	14	S845			1453.cel
7	20	S845			155R.cel
8	33	S845			254.cel
9	64	S845			65R.cel
10	38	S845			288.cel
11	3	S846			106.cel
12	5	S846			12.cel
13	61	S844 S846			57.cel
14	2	S844 S846			104.cel
15	15	S844 S846			147.cel
16	23	S844 S846			1621.cel
17	6	S844 S846			1284.cel
18	29	S844 S846			222.cel
19	41	S844 S846			323.cel
20	44	S844 S846			345.cel
21	69	S844 S846			90.cel
22	1	S846			100R.cel
23	26	S846			1854R.cel
24	35	S846			274.cel
25	31	S846			242.cel
26	27	S846			190.cel
27	32	S846			246.cel
28	36	S846			283.cel
29	42	S846			328.cel
30	9	S846			1317.cel
31	17	S846			1497R.cel
32	34	S846			269.cel
33	49	S846			396.cel
34	28	S846			218.cel
35	45	S846			349.cel
36	43	S846			344.cel
37	18	S841 S846			15.cel
38	22	S841 S846			159.cel
39	7	S841 S846			129.cel
40	40	S841 S846			300.cel
41	8	S841 S846			1308.cel
42	53	S841 S846			461.cel
43	68	S841 S846			84.cel
44	10	S841 S846			1360.cel
45	30	S841 S846			236.cel
46	70	S841 S846			93.cel
47	74	S841 S846			ge205.cel
48	58	S841 S846			558.cel
49	66	S841 S846			80.cel
50	73	S841 S846			ge197.cel
51	50	S846			428.cel
52	21	S846			157.cel
53	51	S846			444.cel
54	62	S846			574.cel
55	24	S846			1622R.cel
56	39	S846			30.cel
57	46	S846			356bis.cel
58	52	S846			458.cel
59	59	S846			563.cel
60	71	S846			94bis.cel
61	37	S846			284.cel
62	57	S846			547.cel
63	47	S846			360.cel
64	11	S846			1399.cel
65	12	S846			1430.cel
66	67	S846			83.cel
67	55	S842 S846			527.cel
68	56	S842 S846			528bis.cel
69	54	S842 S846			506.cel
70	65	S842 S846			70.cel
71	60	S846			566.cel
72	48	S846			390.cel
73	72	S846			97.cel
74	63				63.cel

Genes Names

1	9	205498_at		GHR Chr:5p13-p12
2	10	206953_s_at		LPHN2 Chr:1p31.1
3	2	201925_s_at		DAF Chr:1q32
4	21	226210_s_at		MEG3 Chr:14q32
5	22	226211_at		MEG3 Chr:14q32
6	3	202409_at		--- ---
7	4	202410_x_at		IGF2 Chr:11p15.5
8	6	203477_at		COL15A1 Chr:9q21-q22
9	11	207002_s_at		PLAGL1 Chr:6q24-q25
10	12	207943_x_at		PLAGL1 Chr:6q24-q25
11	13	209318_x_at		PLAGL1 Chr:6q24-q25
12	20	215513_at		HYMAI Chr:6q24
13	28	232355_at		--- ---
14	7	203924_at		GSTA1 Chr:6p12.1
15	8	204548_at		STAR Chr:8p11.2
16	5	202965_s_at		CAPN6 Chr:xq23
17	17	212713_at		MFAP4 Chr:17p11.2
18	14	209560_s_at		DLK1 Chr:14q32
19	15	210002_at		GATA6 Chr:18q11.1-q11.2
20	1	1559282_at		--- ---
21	24	227297_at		ITGA9 Chr:3p21.3
22	26	227911_at		FLJ10312 Chr:18p11.23
23	27	227947_at		C6orf56 Chr:6q24.1
24	31	236220_at		--- ---
25	33	239006_at		SLC26A7 Chr:8q23
26	19	213943_at		TWIST1 Chr:7p21.2
27	32	237945_at		--- ---
28	34	242856_at		--- ---
29	23	226905_at		MGC45871 Chr:17p13
30	25	227646_at		EBF Chr:5q34
31	29	233261_at		EBF Chr:5q34
32	16	210794_s_at		MEG3 Chr:14q32
33	18	212956_at		KIAA0882 Chr:4q31.1
34	30	234994_at		KIAA1913 Chr:6q23.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 18:55:02