S6_using_G21

Super-paramagnetic Clustering of 74 points in a 213 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S832 S833	1437.cel
2	4	S832 S833	1076.cel
3	16	S832 S833	148.cel
4	19	S832 S833	1553.cel
5	25	S833	1780.cel
6	8	S837 S839 S840	1308.cel
7	7	S837 S839 S840	129.cel
8	11	S837 S839 S840	1399.cel
9	27	S837 S839 S840	190.cel
10	34	S837 S839 S840	269.cel
11	36	S837 S839 S840	283.cel
12	18	S837 S839 S840	15.cel
13	44	S837 S839 S840	345.cel
14	1	S837 S839 S840	100R.cel
15	61	S837 S839 S840	57.cel
16	37	S839 S840	284.cel
17	22	S840	159.cel
18	39	S840	30.cel
19	45	S840	349.cel
20	2	S834 S835 S838 S840	104.cel
21	31	S834 S835 S838 S840	242.cel
22	14	S834 S835 S838 S840	1453.cel
23	32	S834 S835 S838 S840	246.cel
24	21	S834 S835 S838 S840	157.cel
25	29	S834 S835 S838 S840	222.cel
26	9	S834 S835 S838 S840	1317.cel
27	6	S834 S835 S838 S840	1284.cel
28	15	S834 S835 S838 S840	147.cel
29	30	S834 S835 S838 S840	236.cel
30	35	S834 S835 S838 S840	274.cel
31	28	S834 S835 S838 S840	218.cel
32	60	S834 S835 S838 S840	566.cel
33	68	S834 S835 S838 S840	84.cel
34	33	S834 S835 S838 S840	254.cel
35	73	S834 S835 S838 S840	ge197.cel
36	50	S834 S835 S838 S840	428.cel
37	41	S834 S835 S838 S840	323.cel
38	20	S834 S835 S838 S840	155R.cel
39	64	S834 S835 S838 S840	65R.cel
40	69	S834 S835 S838 S840	90.cel
41	49	S834 S835 S838 S840	396.cel
42	17	S834 S835 S838 S840	1497R.cel
43	71	S834 S835 S838 S840	94bis.cel
44	23	S834 S835 S838 S840	1621.cel
45	24	S834 S835 S838 S840	1622R.cel
46	46	S834 S835 S838 S840	356bis.cel
47	51	S834 S835 S838 S840	444.cel
48	26	S834 S835 S838 S840	1854R.cel
49	72	S834 S835 S838 S840	97.cel
50	53	S834 S835 S838 S840	461.cel
51	55	S834 S835 S838 S840	527.cel
52	59	S834 S835 S838 S840	563.cel
53	65	S834 S835 S838 S840	70.cel
54	52	S835 S838 S840	458.cel
55	42	S838 S840	328.cel
56	63	S838 S840	63.cel
57	10	S840	1360.cel
58	70	S840	93.cel
59	43	S840	344.cel
60	54	S840	506.cel
61	48	S840	390.cel
62	58	S840	558.cel
63	38	S840	288.cel
64	74	S840	ge205.cel
65	66	S840	80.cel
66	47	S840	360.cel
67	5	S840	12.cel
68	12	S836 S840	1430.cel
69	40	S836 S840	300.cel
70	56	S836 S840	528bis.cel
71	62	S836 S840	574.cel
72	3	S840	106.cel
73	57	S840	547.cel
74	67	S840	83.cel

Genes Names

1	13	1557961_s_at	--- ---
2	33	204513_s_at	ELMO1 Chr:7p14.1
3	4	1554007_at	--- ---
4	60	206382_s_at	BDNF Chr:11p13
5	55	206051_at	ELAVL4 Chr:1p34
6	187	238073_at	ELAVL4 Chr:1p34
7	23	203911_at	RAP1GA1 Chr:1p36.1-p35
8	40	204726_at	CDH13 Chr:16q24.2-q24.3
9	41	204730_at	RIMS3 Chr:1pter-p22.2
10	7	1556047_s_at	KIAA1587 Chr:xq13.2
11	20	203159_at	GLS Chr:2q32-q34
12	49	205551_at	SV2B Chr:15q26.1
13	21	203797_at	VSNL1 Chr:2p24.3
14	35	204584_at	L1CAM Chr:xq28
15	36	204675_at	SRD5A1 Chr:5p15
16	30	204337_at	RGS4 Chr:1q23.2
17	31	204339_s_at	RGS4 Chr:1q23.2
18	22	203798_s_at	VSNL1 Chr:2p24.3
19	141	228262_at	FLJ14503 Chr:xp22.13
20	59	206376_at	SLC6A15 Chr:12q21.3
21	137	227702_at	CYP4X1 Chr:1p33
22	61	206456_at	GABRA5 Chr:15q11.2-q12
23	210	243929_at	--- ---
24	111	219937_at	TRHDE Chr:12q15-q21
25	98	214945_at	NY-REN-7 Chr:5q35.3
26	11	1556366_s_at	FLJ33708 Chr:6p24.3
27	108	219425_at	SULT4A1 Chr:22q13.2-q13.31
28	3	1553864_at	DKFZp761H2121 Chr:10q26.13
29	63	206678_at	GABRA1 Chr:5q34-q35
30	172	233002_at	KIAA1622 Chr:14q32.2
31	153	230137_at	FLJ30834 Chr:4q27
32	112	220030_at	STYK1 Chr:12p13.31
33	64	206780_at	GAD2 Chr:10p11.23
34	10	1556351_at	HCN1 Chr:5p12
35	8	1556095_at	UNC13C Chr:15q21.1
36	26	204081_at	NRGN Chr:11q24
37	85	213921_at	SST Chr:3q28
38	46	205113_at	NEF3 Chr:8p21
39	28	204229_at	SLC17A7 Chr:19q13
40	205	242404_at	--- ---
41	1	1552714_at	CREG2 Chr:2q12.1
42	165	231489_x_at	--- ---
43	53	205827_at	CCK Chr:3p22-p21.3
44	211	244118_at	GABRA1 Chr:5q34-q35
45	2	1553422_s_at	A2BP1 Chr:16p13.3
46	12	1557122_s_at	--- ---
47	124	224650_at	MAL2 Chr:8q23
48	25	203999_at	SYT1 Chr:12cen-q21
49	73	210247_at	SYN2 Chr:3p25
50	171	232426_at	--- ---
51	213	52837_at	KIAA1644 Chr:22q13
52	113	220359_s_at	ARPP-21 Chr:3p22.1
53	114	221217_s_at	A2BP1 Chr:16p13.3
54	24	203998_s_at	SYT1 Chr:12cen-q21
55	72	210227_at	DLGAP2 Chr:8p23
56	9	1556096_s_at	UNC13C Chr:15q21.1
57	159	230551_at	--- ---
58	185	237384_x_at	--- ---
59	183	236456_at	PTPN5 Chr:11p15.1
60	202	241807_x_at	--- ---
61	50	205635_at	HAPIP Chr:3q21.2
62	87	214044_at	RYR2 Chr:1q42.1-q43
63	15	1568612_at	GABRG2 Chr:5q31.1-q33.1
64	144	229039_at	SYN2 Chr:3p25
65	34	204546_at	KIAA0513 Chr:16q24.1
66	18	202507_s_at	SNAP25 Chr:20p12-p11.2
67	110	219671_at	HPCAL4 Chr:1p34.2
68	128	226086_at	SYT13 Chr:11p12-p11
69	48	205414_s_at	KIAA0672 Chr:17p12
70	109	219659_at	ATP8A2 Chr:13q12-13
71	71	210040_at	SLC12A5 Chr:20q13.12
72	200	241399_at	TAFA2 Chr:12q13.3-q14.1
73	126	225111_s_at	NAPB Chr:20p12.3-p11.21
74	197	239765_at	--- ---
75	131	227053_at	PACSIN1 Chr:6p21.3
76	99	214956_at	--- ---
77	193	239357_at	--- ---
78	89	214098_at	KIAA1107 Chr:1p22.1
79	96	214811_at	KIAA0318 Chr:12q24.33
80	123	224209_s_at	GDA Chr:9q21.11-21.33
81	51	205691_at	SYNGR3 Chr:16p13
82	68	209726_at	CA11 Chr:19q13.3
83	194	239579_at	ABHD7 Chr:1p22.1
84	122	224164_at	TPM3 Chr:1q21.2
85	147	229254_at	DKFZp761N1114 Chr:1q32.1
86	201	241672_at	LOC400120 Chr:13q13.2
87	101	215241_at	TMEM16C Chr:11p14.3
88	17	202260_s_at	STXBP1 Chr:9q34.1
89	57	206196_s_at	RPIP8 Chr:17q21.31
90	120	223529_at	SYT4 Chr:18q12.3
91	38	204722_at	SCN3B Chr:11q24.1
92	92	214230_at	CDC42 Chr:1p36.1
93	176	235066_at	MAP4 Chr:3p21
94	121	223654_s_at	BRUNOL4 Chr:18q12
95	191	238966_at	BRUNOL4 Chr:18q12
96	70	210016_at	MYT1L Chr:2p25.3
97	149	229300_at	--- ---
98	208	243666_at	BRUNOL4 Chr:18q12
99	19	202712_s_at	CKMT1 Chr:15q15
100	39	204723_at	SCN3B Chr:11q24.1
101	156	230262_at	--- ---
102	206	242999_at	ARHGEF7 Chr:13q34
103	65	209556_at	NCDN Chr:1p34.3
104	129	226382_at	LOC283070 Chr:10p14
105	14	1559545_at	--- ---
106	104	218623_at	HMP19 Chr:5q35.2
107	152	230076_at	FLJ10156 Chr:17p13.2
108	190	238786_at	--- ---
109	84	213904_at	--- ---
110	106	219308_s_at	AK5 Chr:1p31
111	161	230698_at	--- ---
112	198	239767_at	--- ---
113	27	204134_at	PDE2A Chr:11q13.3
114	6	1555958_at	CRTAC1 Chr:10q22
115	32	204465_s_at	INA Chr:10q24.33
116	54	206013_s_at	ACTL6 Chr:7q22
117	44	204869_at	PCSK2 Chr:20p11.2
118	93	214376_at	--- ---
119	169	232305_at	HMGCLL1 Chr:6p12.1
120	182	236448_at	UNC5A Chr:5q35.3
121	155	230255_at	GABRD Chr:1p36.3
122	199	241382_at	--- ---
123	90	214111_at	OPCML Chr:11q25
124	37	204697_s_at	CHGA Chr:14q32
125	119	223500_at	CPLX1 Chr:4p16.3
126	132	227226_at	C6orf117 Chr:6q15
127	148	229294_at	JPH3 Chr:16q24.3
128	162	230932_at	--- ---
129	158	230497_at	BRUNOL5 Chr:19p13
130	203	242193_at	--- Chr:8q12.3
131	195	239671_at	--- ---
132	45	204953_at	SNAP91 Chr:6q15
133	133	227240_at	NGEF Chr:2q37
134	136	227690_at	GABRB3 Chr:15q11.2-q12
135	150	229724_at	GABRB3 Chr:15q11.2-q12
136	170	232411_at	--- ---
137	178	235230_at	--- ---
138	173	233139_at	--- ---
139	181	236166_at	LOC285147 Chr:2p25.2
140	16	202073_at	OPTN Chr:10p14
141	47	205257_s_at	AMPH Chr:7p14-p13
142	81	213307_at	SHANK2 Chr:11q13.2
143	43	204763_s_at	GNAO1 Chr:16q13
144	135	227641_at	MGC33974 Chr:16p13.3
145	74	210721_s_at	PAK7 Chr:20p12
146	139	227830_at	GABRB3 Chr:15q11.2-q12
147	168	231986_at	RIMS1 Chr:6q12-q13
148	207	243163_at	--- ---
149	75	212473_s_at	MICAL2 Chr:11p15.3
150	62	206552_s_at	TAC1 Chr:7q21-q22
151	143	229029_at	--- ---
152	80	213280_at	GARNL4 Chr:17p13.3
153	103	216086_at	SV2C Chr:5q13.3
154	125	224801_at	NDFIP2 Chr:13q22.2
155	196	239678_at	--- ---
156	204	242344_at	--- ---
157	76	213040_s_at	NPTXR Chr:22q13.1
158	82	213308_at	SHANK2 Chr:11q13.2
159	157	230287_at	RUTBC2 Chr:22q11.23
160	209	243681_at	SHANK2 Chr:11q13.2
161	177	235227_at	--- ---
162	52	205818_at	DBC1 Chr:9q32-q33
163	86	213938_at	CAST Chr:3p21.31
164	97	214874_at	PKP4 Chr:2q23-q31
165	94	214607_at	PAK3 Chr:xq22.3-q23
166	146	229201_at	--- ---
167	77	213122_at	TSPYL5 Chr:8q22.1
168	100	215116_s_at	DNM1 Chr:9q34
169	107	219368_at	NAP1L2 Chr:xq13
170	142	228414_at	LOC142955 Chr:10q22.3
171	58	206290_s_at	RGS7 Chr:1q43
172	145	229057_at	--- ---
173	29	204260_at	CHGB Chr:20pter-p12
174	151	229823_at	--- ---
175	167	231935_at	ARPP-21 Chr:3p22.1
176	42	204743_at	NP25 Chr:3q13.13-q13.2
177	66	209583_s_at	MOX2 Chr:3q12-q13
178	91	214157_at	GNAS Chr:20q13.2-q13.3
179	118	223362_s_at	38233 Chr:22q13.2
180	140	228194_s_at	SORCS1 Chr:10q23-q25
181	95	214762_at	ATP6V1G2 Chr:6p21.3
182	179	235486_at	MGC34830 Chr:11p13
183	188	238673_at	--- ---
184	164	231325_at	UNC5D Chr:8p12-p11.23
185	184	236656_s_at	--- ---
186	5	1555370_a_at	CAMTA1 Chr:1p36.23
187	79	213268_at	CAMTA1 Chr:1p36.23
188	105	218720_x_at	PSK-1 Chr:16p12.1
189	166	231771_at	GJB6 Chr:13q12
190	212	244680_at	GLRB Chr:4q31.3
191	67	209683_at	DKFZP566A1524 Chr:2p24.3
192	78	213172_at	TTC9 Chr:14q24.1
193	83	213386_at	--- ---
194	130	226864_at	PKIA Chr:8q21.11
195	154	230238_at	LOC134548 Chr:5q31.1
196	163	231166_at	GPR155 Chr:2q31.1
197	189	238727_at	--- ---
198	69	209982_s_at	NRXN2 Chr:11q13
199	102	215307_at	--- ---
200	138	227817_at	PRKCB1 Chr:16p11.2
201	115	221792_at	--- ---
202	192	239293_at	VMP Chr:6p22.1
203	88	214046_at	--- ---
204	56	206084_at	PTPRR Chr:12q15
205	116	221801_x_at	NEFL Chr:8p21
206	174	233499_at	KIAA1365 Chr:1p31.2
207	160	230692_at	LOC157503 Chr:8q11.23
208	186	237802_at	KIAA1889 Chr:8q11.23
209	117	223340_at	SPG3A Chr:14q22.1
210	127	225792_at	--- ---
211	134	227365_at	ATCAY Chr:19p13.3
212	175	234303_s_at	GPR85 Chr:7q31
213	180	236024_at	GPM6A Chr:4q34

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 18:27:17

S6_using_G21

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC