S6_using_G2

Super-paramagnetic Clustering of 74 points in a 19 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=11)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    14 S706 S7071076.cel
    219 S706 S7071553.cel
    325 S706 S7071780.cel
    416 S706 S707148.cel
    545 S706 S707349.cel
    663 S706 S70763.cel
    737 S706 S707284.cel
    862 S706 S707574.cel
    918 S706 S70715.cel
    1066 S706 S70780.cel
    1170 S70793.cel
    127 129.cel
    1331 242.cel
    1413 1437.cel
    155 S70512.cel
    162 S705104.cel
    171 S705100R.cel
    1823 S7051621.cel
    1960 S705566.cel
    2038 S705288.cel
    2165 S70570.cel
    2236 S705283.cel
    233 S705106.cel
    246 S7051284.cel
    2535 S705274.cel
    2639 S70530.cel
    2724 S7051622R.cel
    2826 S7051854R.cel
    2910 S7051360.cel
    3058 S705558.cel
    3115 S705147.cel
    3230 S705236.cel
    3329 S705222.cel
    3450 S705428.cel
    3561 S70557.cel
    3654 S705506.cel
    3747 S705360.cel
    3869 S70590.cel
    3934 S705269.cel
    409 S7051317.cel
    4146 S705356bis.cel
    4217 S7051497R.cel
    4321 S705157.cel
    4411 S703 S7051399.cel
    4522 S703 S705159.cel
    4640 S703 S705300.cel
    4748 S703 S705390.cel
    4812 S703 S7051430.cel
    4957 S703 S705547.cel
    5049 S705396.cel
    5159 S705563.cel
    528 S7051308.cel
    5374 S705ge205.cel
    5467 S70583.cel
    5572 S70597.cel
    5628 S705218.cel
    5771 S70594bis.cel
    5842 S705328.cel
    5943 S705344.cel
    6055 S705527.cel
    6156 S705528bis.cel
    6251 S705444.cel
    6314 S7051453.cel
    6420 S704 S705155R.cel
    6532 S704 S705246.cel
    6664 S704 S70565R.cel
    6733 S704 S705254.cel
    6841 S704 S705323.cel
    6968 S704 S70584.cel
    7073 S704 S705ge197.cel
    7153 S705461.cel
    7227 S705190.cel
    7344 S705345.cel
    7452 458.cel

    Genes Names

    12201028_s_atCD99 Chr:xp22.32; yp11.3
    25201798_s_atFER1L3 Chr:10q24
    36203854_atIF Chr:4q25
    47204646_atDPYD Chr:1p22
    51200986_atSERPING1 Chr:11q12-q13.1
    612210427_x_atANXA2 Chr:15q21-q22
    74201590_x_atANXA2 Chr:15q21-q22
    814213503_x_atANXA2 Chr:15q21-q22
    911208816_x_atANXA2P1 Chr:4q21-q31
    103201426_s_atVIM Chr:10p13
    1110208747_s_atC1S Chr:12p13
    1213212067_s_atC1R Chr:12p13
    1317221773_atELK3 Chr:12q23
    148207808_s_atPROS1 Chr:3q11.2
    1515214853_s_atSHC1 Chr:1q21
    1616218983_atC1RL Chr:12p13.31
    179208659_atCLIC1 Chr:6p22.1-p21.2
    1818226621_atFGG Chr:4q28
    1919228141_at--- ---

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)11
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 13-Aug-2004 11:41:25